SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80608

Length: 263 nt

UniGene Fasta

>sp_v3.0_unigene80608
TTTGACATAACAAATACTGAACGCCTATTGCAAAAGATTTCCGCGGAGGACTTGAAAGCGTTCAACTTCGATGTAAAATGCATCGATTGGGTCGATTACCTGTCAAACGTCCATATCCCTGGGGTAGTCAAATATGTGCTTAAGTGAAACATGGGCAATGGCATTGATAACCTCCTCACCAGCTAAGTCCAGTTAGACTATATCATATGATTGTGAAGTCTTTCAACCAAATAATTCCTACACCATTTGCTTCATAAACATGA

Ace file of the UniGene sp_v3.0_unigene80608

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	male sterility 2 (MS2) protein [Arabidopsis thaliana] prf\|\|1916413A male sterility 2 gene	-	-	4.0e-08	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Male sterility	IPR004262	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G11980.1	MS2, FAR2 Jojoba acyl CoA reductase-related male sterility protein chr3:3814484-3816927 FORWARD LENGTH=616	1.0e-11	50%
RefSeq	Arabidopsis thaliana	NP_187805.1	fatty acyl-CoA reductase 2 [Arabidopsis thaliana]	2.0e-11	50%
RefSeq	Populus trichocarpa	XP_002333383.1	predicted protein [Populus trichocarpa]	2.0e-12	52%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRT2

Fln msg: your sequence is shorter than subject: 49 - 510

Fln protein: FDITNTERLLQKISAEDLKAFNFDVKCIDWVDYLSNVHIPGVVKYVLK*

Protein Length: 50

Fln nts: TTTGACATAACAAATACTGAACGCCTATTGCAAAAGATTTCCGCGGAGGACTTGAAAGCGTTCAACTTCGATGTAAAATGCATCGATTGGGTCGATTACCTGTCAAACGTCCATATCCCTGGGGTAGTCAAATATGTGCTTAAGTGA___AACATGGGCAATGGCATTGATAACCTCCTCACCAGCTAAGTCCAGTTAGACTATATCATATGATTGTGAAGTCTTTCAACCAAATAATTCCTACACCATTTGCTTCATAAACATGA

Fln Alignment:

GDTE5QK01DD997___FDITNTERLLQKISAEDLKAFNFDVKCIDWVDYLSNVHIPGVVKYVLK
B8LRT2_______________FDITNTERLLEKVSVQDLEAFNFDVKCIDWVEYLSNVHIPGVVKYVLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain