SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80607

Length: 308 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80607
GCTAGCAAAGTTACAGAATCTATGGGCTACTTCTTGTAATCTTGTGGGTGATATTCCGGAAGCGTTTGGCAATCTGCTGTCTTTGACGAATCTGGATCTGTCTTGGAATCAGCTCTCGGGAATTATTCCAGAGGCCATCACAAAGTTGAATCAAATAGTACAGATTGAGCTCTATCATAATAACTTAACAGGAAGAATTCCTGAGAACTGGGCTAATCTTGTTTCTCTCAGACATTTTGATGCCTCAACAAATATGCTTAACGGGACCATACCTGAGCAGCTGGCAAGGTTGCCACTTTCGTCCTTGA

Ace file of the UniGene sp_v3.0_unigene80607 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	2.0e-27	62%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	62%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	2.158e-08	-

Source	Gene names
Sma3	AT1G28440; AT4G28490; AT5G65710; At1g28440; At4g28490; CLV; F21O9.180; F6H11.160; GSVIVT00003044001; GSVIVT00010648001; GSVIVT00018647001; LRPKm1; LRR-RLK; MtrDRAFT_AC158497g45v2; OJ1705_C03.108; Os08g0376300; OsI_29049; OsJ_27118; P0436B06.34; POPTRDRAFT

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G28440.1	HSL1 HAESA-like 1 chr1:9996914-10000171 FORWARD LENGTH=996	2.0e-27	51%
RefSeq	Arabidopsis thaliana	NP_174166.1	receptor-like protein kinase HSL1 [Arabidopsis thaliana]	3.0e-27	51%
RefSeq	Populus trichocarpa	XP_002305776.1	predicted protein [Populus trichocarpa]	4.0e-30	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Distance to subject end: 684 aas, your sequence is shorter than subject: 102 - 998

Fln protein: LAKLQNLWATSCNLVGDIPEAFGNLLSLTNLDLSWNQLSGIIPEAITKLNQIVQIELYHNNLTGRIPENWANLVSLRHFDASTNMLNGTIPEQLARLPLSSL

Protein Length: 103

Fln nts: GCTAGCAAAGTTACAGAATCTATGGGCTACTTCTTGTAATCTTGTGGGTGATATTCCGGAAGCGTTTGGCAATCTGCTGTCTTTGACGAATCTGGATCTGTCTTGGAATCAGCTCTCGGGAATTATTCCAGAGGCCATCACAAAGTTGAATCAAATAGTACAGATTGAGCTCTATCATAATAACTTAACAGGAAGAATTCCTGAGAACTGGGCTAATCTTGTTTCTCTCAGACATTTTGATGCCTCAACAAATATGCTTAACGGGACCATACCTGAGCAGCTGGCAAGGTTGCCACTTTCGTCCTTGA

Fln Alignment:

GDTE5QK01CH1G1___LAKLQNLWATSCNLVGDIPEAFGNLLSLTNLDLSWNQLSGIIPEAITKLNQIVQIELYHNNLTGRIPENWANLVSLRHFDASTNMLNGTIPEQLARLPLSSL
Q19AV8_______________LTKLQNLWLAGCNLVGEIPETLGNLAELTNLDLSINRLSGSIPESITKLDKVAQIELYQNLLSGPIPVAMGELKALKRFDASMNMLNGSIPAGLGSLNLESL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain