SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80512

Length: 232 nt

UniGene Fasta

>sp_v3.0_unigene80512
TTGAATGACAATCAACTAGATAGTGGCAATGCTATAAACATGCCTTTTCTTACTGCTCTTACTAATTGTTCTCATTTAAACTATTTATGGTTGCAGAACAATAATTTAAGTGGTGTTTTGCCACTTGCTATAGGTAGACTTTCTACTAATTTATCTATGTTAGACTTATCAAATAATAAAATACAAGGAAACATCCCTCTACATATAGGCAATCTTAGCACCTTAACCTTCT

Ace file of the UniGene sp_v3.0_unigene80512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative LRR-kinase protein n=1 Tax=Oryza sativa Japonica Group RepID=B9A1H1_ORYSJ	-	-	7.0e-13	54%
FL-Next	tr=Uncharacterized protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	53%
Sma3	Putative LRR-kinase protein	-	-	6.335e-06	-

Source	Gene names
Sma3	KINt1;

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47110.1	Leucine-rich repeat protein kinase family protein chr3:17347103-17350296 REVERSE LENGTH=1025	8.0e-14	49%
RefSeq	Arabidopsis thaliana	NP_190295.1	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	1.0e-13	49%
RefSeq	Populus trichocarpa	XP_002322110.1	predicted protein [Populus trichocarpa]	2.0e-15	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: I4DUG2

Fln msg: Distance to subject end: 297 aas, your sequence is shorter than subject: 77 - 743

Fln protein: LNDNQLDSGNAINMPFLTALTNCSHLNYLWLQNNNLSGVLPLAIGRLSTNLSMLDLSNNKIQGNIPLHIGNLSTLTF

Protein Length: 78

Fln nts: TTGAATGACAATCAACTAGATAGTGGCAATGCTATAAACATGCCTTTTCTTACTGCTCTTACTAATTGTTCTCATTTAAACTATTTATGGTTGCAGAACAATAATTTAAGTGGTGTTTTGCCACTTGCTATAGGTAGACTTTCTACTAATTTATCTATGTTAGACTTATCAAATAATAAAATACAAGGAAACATCCCTCTACATATAGGCAATCTTAGCACCTTAACCTTCT

Fln Alignment:

GDTE5QK01BT5A2___LNDNQLDSGNAINMPFLTALTNCSHLNYLWLQNNNLSGVLPLAIGRLSTNLSMLDLSNNKIQGNIPLHIGNLSTLTF
I4DUG2_______________LSQNQLVSTSRNTLDFLNALTNCSHLELIDVSDNHFTGVLPPSIGQLSPNLSRLNLSHNMISGTIPQQIANLTNLTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain