SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80474

Length: 418 nt

UniGene Fasta

>sp_v3.0_unigene80474
CCCTGGAAGGCCAGAAGGAGAAGTGCCGCACGCCCTTACCAAGGATGAAATCAAGGAGTATATTGCCGCCTACGCCGCCGCCGCAAGAAACGCTATCCGAGCAGGCTTCGATGGCGTTGAAGTTCACGGCGCGAATGGCTATCTGCCCGACCAGTTCATCCAAGATGTCACCAACAAGCGCACGGACGAATATGGCGGAAGTGTCGAGAATCGCGCAAGATTCGTGCTCGAGGTTGTAGATGCCATCGTAGAGGCCGTTGGTGCAGAAAGAACGAGCATCCGATTTAGTCCATGGGGCACTTTCCAAGGTATGGGCATGGCAGATCCAAAGCCTCAGTTCTCATATATCGTCGAGTGGCTCCGCAAGCACAAACTCGCATACATCCACCTCGTAGAGCCCGAGTCCTCCGAGCACAAC

Ace file of the UniGene sp_v3.0_unigene80474

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NADH:flavin oxidoreductase/NADH oxidase family protein n=2 Tax=Aspergillus RepID=B8N0C7_ASPFN	-	-	9.99967e-42	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	12-oxo-phytodienoic acid reductase	-	-	1.279e-19	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-CH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.3.1.-	-	5.623e-06	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		5.623e-06	%
Sma3	Phenylalanine metabolism	00360		5.623e-06	%
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361		5.623e-06	%
Sma3	Fluorobenzoate degradation	00364		5.623e-06	%
Sma3	Tryptophan metabolism	00380		5.623e-06	%
Sma3	Xylene degradation	00622		5.623e-06	%
Sma3	Toluene degradation	00623		5.623e-06	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		5.623e-06	%
Sma3	Propanoate metabolism	00640		5.623e-06	%
Sma3	Isoflavonoid biosynthesis	00943		5.623e-06	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		5.623e-06	%
Sma3	Metabolic pathways	01100		5.623e-06	%
Sma3	12-oxophytodienoate reductase.	EC:1.3.1.42	-	6.555e-26	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	6.555e-26	%
Sma3	Biosynthesis of plant hormones	01070	6.555e-26	%
Sma3	Metabolic pathways	01100	6.555e-26	%

Source	Gene names
Sma3	At1g09400; At1g17990; At1g18020; At1g76680; At1g76690; CHLREDRAFT_121264; CHLREDRAFT_132041; CHLREDRAFT_192522; CROYEH; F14J9.6; F28O16.5; F28O16.6; F2H15.21; GSVIVT00002893001; GSVIVT00021891001; GSVIVT00021908001; GSVIVT00021909001; GSVIVT00021911001; G

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76690.1	OPR2, ATOPR2 12-oxophytodienoate reductase 2 chr1:28778976-28780355 FORWARD LENGTH=374	5.0e-31	48%
RefSeq	Arabidopsis thaliana	NP_177795.1	12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	6.0e-31	48%
RefSeq	Populus trichocarpa	XP_002336741.1	predicted protein, partial [Populus trichocarpa]	1.0e-32	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT17

Fln msg: Distance to subject end: 89 aas, your sequence is shorter than subject: 139 - 376

Fln protein: PGRPEGEVPHALTKDEIKEYIAAYAAAARNAIRAGFDGVEVHGANGYLPDQFIQDVTNKRTDEYGGSVENRARFVLEVVDAIVEAVGAERTSIRFSPWGTFQGMGMADPKPQFSYIVEWLRKHKLAYIHLVEPESSEHN

Protein Length: 140

Fln nts: CCCTGGAAGGCCAGAAGGAGAAGTGCCGCACGCCCTTACCAAGGATGAAATCAAGGAGTATATTGCCGCCTACGCCGCCGCCGCAAGAAACGCTATCCGAGCAGGCTTCGATGGCGTTGAAGTTCACGGCGCGAATGGCTATCTGCCCGACCAGTTCATCCAAGATGTCACCAACAAGCGCACGGACGAATATGGCGGAAGTGTCGAGAATCGCGCAAGATTCGTGCTCGAGGTTGTAGATGCCATCGTAGAGGCCGTTGGTGCAGAAAGAACGAGCATCCGATTTAGTCCATGGGGCACTTTCCAAGGTATGGGCATGGCAGATCCAAAGCCTCAGTTCTCATATATCGTCGAGTGGCTCCGCAAGCACAAACTCGCATACATCCACCTCGTAGAGCCCGAGTCCTCCGAGCACAAC

Fln Alignment:

GDTE5QK01DDV2S___PHALTKDEIKEXXXXXXXXXXXXXXXGFDGVEVHGANGYLPDQFIQDVTNKRTDEYGGSVENRARFVLEVVDAIVEAVGAERTSIRFSPWGTFQGMGMADPKPQFSYIVEWLRKHKLAYIHLVEP
A9NT17_______________PRALKIEEIPQIINDFRLAARNAIKAGFDGVEIHGAHGYLLDQFMKDSINNRIDQYGGTLENRCRFPLEVVEAVANEIGAERVGIRLSPFAQFLESSDSDPEALGLYMAETLNRYNILYAHYVEP

SSRs (tot: 1)

Start position	End position	Sequence	Length
73	84	CGC CGC CGC CGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain