SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80463

Length: 151 nt

UniGene Fasta

>sp_v3.0_unigene80463
CCCAGATGTCTCCATGGGTGATCAATCAAGAATTCTTACGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGTATGCCGATACCAGTGGAGCTGGGAAAGATGTCTATGAATTCTTGATTGATCACCCATGGAGCATCTGGG

Ace file of the UniGene sp_v3.0_unigene80463

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cholinephosphate cytidylyltransferase n=1 Tax=Pisum sativum RepID=P93470_PEA	-	-	2.0e-09	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Choline-phosphate cytidylyltransferase B	-	-	1.012e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Choline-phosphate cytidylyltransferase.	EC:2.7.7.15	-	5.572e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Phosphonate and phosphinate metabolism	00440	5.572e-19	%
Sma3	Glycerophospholipid metabolism	00564	5.572e-19	%
Sma3	Metabolic pathways	01100	5.572e-19	%

Source	Gene names
Sma3	AT4g15130; At2g32260; AtCCT2; CCT; CPCT; GSVIVT00030122001; GSVIVT00037567001; LOC_Os10g42790; OSJNBa0056G17.15; Os08g0161800; Os10g0578900; OsI_27913; OsI_34790; OsJ_26135; OsJ_32595; P0577B11.124; PHYPADRAFT_33411; PHYPADRAFT_33429; PHYPADRAFT_46272; PO

Source	GOs	Term	Type	Identity
Sma3	choline-phosphate cytidylyltransferase activity	GO:0004105	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15130.1	ATCCT2, CCT2 phosphorylcholine cytidylyltransferase2 chr4:8637793-8639388 FORWARD LENGTH=304	3.0e-13	93%
RefSeq	Arabidopsis thaliana	NP_193249.5	phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	4.0e-13	93%
RefSeq	Populus trichocarpa	XP_002326446.1	predicted protein, partial [Populus trichocarpa]	1.0e-12	86%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUF9

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 140 aas, your sequence is shorter than subject: 50 - 315

Fln protein: PRCLHG*SIKNSYDKHKIDYVAHDALPYADTSGAGKDVYEFLIDHPWSIW

Protein Length: 51

Fln nts: CCCAGATGTCTCCATGGGTGATCAATCAAGAATTCTTACGACAAGCATAAGATTGACTATGTAGCCCATGATGCCCTTCCGTATGCCGATACCAGTGGAGCTGGGAAAGATGTCTATGAATTCTTGATTGATCACCCATGGAGCATCTGGG

Fln Alignment:

GDTE5QK01EH92X___DKHKIDYVAHDALPYADTSGAGKDVYEFL
A9NUF9_______________DKHQIDYVAHDALPYADTSGAGKDVYQFV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain