SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80370

Length: 332 nt

UniGene Fasta

>sp_v3.0_unigene80370
GTTCTTGTCTATTTGTCGGAAACTATTTCAGCGAGATAAGGGAGGATGCTCAGGAGCCAACTCCGCCAGACGAAGATTGTCAGTGAGGAAGAGGTTAACAGGGCAACTAGTGGTTTCAGCGCGGATAACCTGCTGGGACGTGGAGGCCATGGGTCAGTGTATAAGGGCGTAATAGACAATGGCACAATCGTCGCAGTCAAAGTTATACACTCAGCCACATCTGGAGGTGCATACAAGAGACTTATAAAAGAATGCAAGACGTTGGGCAGAGTCCGACAGCGGAATCTGGTGAGAATGGTGGGCGTATGCTCAAGTTTGCGGGTTAAATCTTT

Ace file of the UniGene sp_v3.0_unigene80370

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group]	-	-	4.0e-13	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%

Source	Gene names
Sma3	OsI_35290; OsI_35291;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68690.1	Protein kinase superfamily protein chr1:25789192-25791886 FORWARD LENGTH=708	2.0e-14	48%
RefSeq	Arabidopsis thaliana	NP_177036.1	protein kinase-like protein [Arabidopsis thaliana]	2.0e-14	48%
RefSeq	Populus trichocarpa	XP_002317696.1	predicted protein [Populus trichocarpa]	3.0e-18	46%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWR4

Fln msg: Distance to subject end: 277 aas, atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 95 - 402

Fln protein: MLRSQLRQTKIVSEEEVNRATSGFSADNLLGRGGHGSVYKGVIDNGTIVAVKVIHSATSGGAYKRLIKECKTLGRVRQRNLVRMVGVCSSLRVKS

Protein Length: 96

Fln nts: GTTCTTGTCTATTTGTCGGAAACTATTTCAGCGAGATAAGGGAGG_-_ATGCTCAGGAGCCAACTCCGCCAGACGAAGATTGTCAGTGAGGAAGAGGTTAACAGGGCAACTAGTGGTTTCAGCGCGGATAACCTGCTGGGACGTGGAGGCCATGGGTCAGTGTATAAGGGCGTAATAGACAATGGCACAATCGTCGCAGTCAAAGTTATACACTCAGCCACATCTGGAGGTGCATACAAGAGACTTATAAAAGAATGCAAGACGTTGGGCAGAGTCCGACAGCGGAATCTGGTGAGAATGGTGGGCGTATGCTCAAGTTTGCGGGTTAAATCTTT

Fln Alignment:

GD4IA4404IMV2A___SQLRQTKIVSEEEVNRATSGFSADNLLGRGGHGSVYKGVIDNGTIVAVKVIHSATSGGAYKRLIKECKTLGRVRQRNLVRMVGVCS
A9NWR4_______________SSIPDVKVYPYAELKIATNIFHLDNKIGSGGFGSVYKGTLKDGTVVAVKQL-SAQSKQGVKEFLTEIATISDVQHENLVKLHGCCA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain