SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80326

Length: 166 nt

UniGene Fasta

>sp_v3.0_unigene80326
GAGAGCTTCAAGGTCTCTGACCTTACCTTCCAATGCTTCGAGCCCAACAACCAAATGGTTGTCTGTGACCCTCGCAACGGAAAGTACATGGCCGTTGCCCTCCTCTACCGTGGTGACATTGTCCCCCGCGACTGCTCCGCTGCCGCTGGTGCGCTCAAGGCCAAGT

Ace file of the UniGene sp_v3.0_unigene80326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Alpha tubulin n=3 Tax=Pleosporineae RepID=B2WCV6_PYRTR	-	-	8.0e-25	100%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%

Source	Gene names
Sma3	atub;

Source	InterPros	Term	Type	Identity
Sma3	Tubulin	IPR000217	-	-
Sma3	Alpha tubulin	IPR002452	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G64740.1	TUA1 alpha-1 tubulin chr1:24050114-24052296 FORWARD LENGTH=450	9.0e-17	56%
RefSeq	Arabidopsis thaliana	NP_176654.1	tubulin alpha-1 chain [Arabidopsis thaliana]	1.0e-16	56%
RefSeq	Populus trichocarpa	XP_002313194.1	tubulin alpha-5 chain [Populus trichocarpa]	7.0e-15	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQU1

Fln msg: Distance to subject end: 112 aas, your sequence is shorter than subject: 55 - 450

Fln protein: ESFKVSDLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDIVPRDCSAAAGALKAK

Protein Length: 56

Fln nts: GAGAGCTTCAAGGTCTCTGACCTTACCTTCCAATGCTTCGAGCCCAACAACCAAATGGTTGTCTGTGACCCTCGCAACGGAAAGTACATGGCCGTTGCCCTCCTCTACCGTGGTGACATTGTCCCCCGCGACTGCTCCGCTGCCGCTGGTGCGCTCAAGGCCAAGT

Fln Alignment:

GD4IA4404I3UXC___ESFKVSDLTFQCFEPNNQMVVCDPRNGKYMAVALLYRGDIVPRDCSAAAGALKAK
C0PQU1_______________EQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain