SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80283

Length: 221 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80283
GGTAATCTGATGACAATCTAATTTTATATAGAATGTTTGCATAAGCATTCAAACGAATTTAATACAATCCTTTCAGTGATATATATATATAACTAATCTGAAAGGATGATTAATTTCACTTAGTATTGTGCAGATGGACGTTGATAGCAGGGCGACTCCCTGGTCGAACTGACAATGAAATAAAGAATTACTGGAATACCCAGTTGAGACAAAGAAGGGTA

Ace file of the UniGene sp_v3.0_unigene80283 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor DcMYB3-1 [Daucus carota]	-	-	2.0e-07	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Anthocyanin regulatory C1 protein	-	-	3.853e-07	-

Source	Gene names
Sma3	At3g13540; At5g35550; C1; C1-B73; C1-I; DcMYB3-1; DcMYB3-2; DcMYB5; FcMYB251; GSVIVT00006679001; GSVIVT00008644001; GSVIVT00016466001; GSVIVT00016469001; GSVIVT00016944001; GSVIVT00032264001; GSVIVT00032266001; GSVIVT00032269001; GSVIVT00034098001; HlMYB2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	mucilage biosynthetic process involved in seed coat development	GO:0048354	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G13540.1	ATMYB5, MYB5 myb domain protein 5 chr3:4420239-4421443 FORWARD LENGTH=249	1.0e-11	82%
RefSeq	Arabidopsis thaliana	NP_187963.1	transcription repressor MYB5 [Arabidopsis thaliana]	2.0e-11	82%
RefSeq	Populus trichocarpa	XP_002327745.1	predicted protein, partial [Populus trichocarpa]	2.0e-12	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NY74

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 74 aas, your sequence is shorter than subject: 73 - 192

Fln protein: *SDDNLILYRMFA*AFKRI*YNPFSDIYI*LI*KDD*FHLVLCRWTLIAGRLPGRTDNEIKNYWNTQLRQRRV

Protein Length: 74

Fln nts: GGTAATCTGATGACAATCTAATTTTATATAGAATGTTTGCATAAGCATTCAAACGAATTTAATACAATCCTTTCAGTGATATATATATATAACTAATCTGAAAGGATGATTAATTTCACTTAGTATTGTGCAGATGGACGTTGATAGCAGGGCGACTCCCTGGTCGAACTGACAATGAAATAAAGAATTACTGGAATACCCAGTTGAGACAAAGAAGGGTA

Fln Alignment:

GD4IA4404IMUDJ___RWTLIAGRLPGRTDNEIKNYWNTQLRQR
A9NY74_______________RWSLIAGRLPGRTDNEIKNYWNTHMKKK

SSRs (tot: 1)

Start position	End position	Sequence	Length
131	143	TA TA TA TA TA TA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain