SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80267

Length: 245 nt

UniGene Fasta

>sp_v3.0_unigene80267
ATTGGTCAAGAGATTGAAGTACGTCCTGGTATTGTAACAAAAGATAAATCTGGTCGTGTAAAATGTGTTCCTATTCGAAGTCAAGTAATAACTTTATTTGCAGAACAAAATGACTTAAAATTTGCTGTCCCTGGTGGACTTATCGGTGTTGGAACCAAAATTGATCCAACTTTAACAAGAGCCGATCGATTAGTTGGACAGGTTTTGGGAGAAGTTGGCAAACTCCCCGAAATCTTTACTCAACT

Ace file of the UniGene sp_v3.0_unigene80267

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor 2 gamma subunit [Araneus quadratus]	-	-	5.0e-30	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Eukaryotic translation initiation factor 2 subunit 3/eIF2S3/eIF-2-gamma	-	-	7.567e-09	-

Source	Gene names
Sma3	AT4g18330; At1g04170; At2g18720; CHLREDRAFT_126673; EIF2G; F20D22.6; GSVIVT00031929001; GSVIVT00035007001; LOC_Os12g07740; LOC_Os12g41400; MICPUCDRAFT_28977; MICPUN_97729; OSTLU_32338; Os12g0176800; Os12g0607100; OsI_37667; OsI_39040; OsJ_35408; OsJ_36806

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	serine-type peptidase activity	GO:0008236	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation initiation factor 2, gamma subunit, C-terminal	IPR015256	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G04170.1	EIF2 GAMMA eukaryotic translation initiation factor 2 gamma subunit chr1:1097423-1099702 FORWARD LENGTH=465	3.0e-35	70%
RefSeq	Arabidopsis thaliana	NP_171913.1	translation initiation factor eIF-2 gamma subunit [Arabidopsis thaliana]	4.0e-35	70%
RefSeq	Populus trichocarpa	XP_002326595.1	predicted protein [Populus trichocarpa]	2.0e-34	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL29

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 81 - 464

Fln protein: IGQEIEVRPGIVTKDKSGRVKCVPIRSQVITLFAEQNDLKFAVPGGLIGVGTKIDPTLTRADRLVGQVLGEVGKLPEIFTQ

Protein Length: 82

Fln nts: ATTGGTCAAGAGATTGAAGTACGTCCTGGTATTGTAACAAAAGATAAATCTGGTCGTGTAAAATGTGTTCCTATTCGAAGTCAAGTAATAACTTTATTTGCAGAACAAAATGACTTAAAATTTGCTGTCCCTGGTGGACTTATCGGTGTTGGAACCAAAATTGATCCAACTTTAACAAGAGCCGATCGATTAGTTGGACAGGTTTTGGGAGAAGTTGGCAAACTCCCCGAAATCTTTACTCAACT

Fln Alignment:

GD4IA4404IAWKF___IGQEIEVRPGIVTKDKSGRVKCVPIRSQVITLFAEQNDLKFAVPGGLIGVGTKIDPTLTRADRLVGQVLGEVGKLPEIFTQ
B8LL29_______________VNQKIEVRPGIVVKDESGNIKCTPIFSRIISLYAEQNELQFAVPGGLIGVGTTIDPTLTRADRLVGQVLGEIGELPDVFVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain