SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80185

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene80185
GCGGTGGTTACTGCTCTTTATGAGTGCCAGAAAGCAATGGGAACAGGTTACCTTTCAGCCTTTCCCTCTGAGTTCTTTGATCGTTTTGAAGCCATCCAACCTGTTTGGGCGCCATATTATACTATTCACAAGATCATGGCAGGATTGCTAGATCAATTTGAGTTCGCTGGAAATGCTCAAGCGTTTAATATGACAGAGTGGATGGCTGAGTAC

Ace file of the UniGene sp_v3.0_unigene80185

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB88259.1\| putative protein [Arabidopsis thaliana] dbj\|BAC42665.1\| unknown protein [Arabidopsis thaliana] gb\|AED91834.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	9.0e-24	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%

Source	Gene names
Sma3	At5g12950; At5g12950/T24H18_120; At5g12960; CHLREDRAFT_188291; CHLREDRAFT_188292; GSVIVT00024646001; GSVIVT00024659001; OJ1225_F07.14; Os02g0195500; OsI_06226; OsI_23690; OsI_23693; OsJ_05746; P0417G12.12; P0429G06.29; PHYPADRAFT_126648; POPTRDRAFT_107457

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	alpha-N-arabinofuranosidase activity	GO:0046556	Molecular Function	-
Sma3	L-arabinose metabolic process	GO:0046373	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Metridin-like ShK toxin	IPR003582	-	-
Sma3	Protein of unknown function DUF1680	IPR012878	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) chr5:4093117-4096806 FORWARD LENGTH=861	8.0e-30	71%
RefSeq	Arabidopsis thaliana	NP_196799.1	uncharacterized protein [Arabidopsis thaliana]	1.0e-29	71%
RefSeq	Populus trichocarpa	XP_002297785.1	predicted protein [Populus trichocarpa]	9.0e-32	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GU88

Fln msg: Distance to subject end: 598 aas, your sequence is shorter than subject: 71 - 864

Fln protein: AVVTALYECQKAMGTGYLSAFPSEFFDRFEAIQPVWAPYYTIHKIMAGLLDQFEFAGNAQAFNMTEWMAEY

Protein Length: 72

Fln nts: GCGGTGGTTACTGCTCTTTATGAGTGCCAGAAAGCAATGGGAACAGGTTACCTTTCAGCCTTTCCCTCTGAGTTCTTTGATCGTTTTGAAGCCATCCAACCTGTTTGGGCGCCATATTATACTATTCACAAGATCATGGCAGGATTGCTAGATCAATTTGAGTTCGCTGGAAATGCTCAAGCGTTTAATATGACAGAGTGGATGGCTGAGTAC

Fln Alignment:

GD4IA4404JIEJK___AVVTALYECQKAMGTGYLSAFPSEFFDRFEAIQPVWAPYYTIHKIMAGLLDQFEFAGNAQAFNMTEWMAEY
F6GU88_______________AVVSALATCQEKMGTGYLSAFPSELFDRFEAIKPVWAPYYTIHKILAGLLDQYTFAGNSQALKMMTWMVEH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain