SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80119

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene80119
TCGAACATTGGAGGAGCTCTTTCGTGTAGCTAACGAGAGAAATGGATTATTTAAATACGATATCTCAGTAAGTGCATTGGAAGTTTACAATGAGCAGATTCGTGATCTACTTGCATCCCCAACTCAGCCAGGGCATACTGTTAAAAAGCTTGAAGTAAAGCAGGTAGCAGAAGGTGTCCATCATGTTCCAGGACTTGTTGAAGCACAAGTACACACCATGAATGAGGTTT

Ace file of the UniGene sp_v3.0_unigene80119

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative kinesin heavy chain [Arabidopsis thaliana]	-	-	7.0e-18	65%
FL-Next	sp=Kinesin-4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Sma3	Kinesin motor protein, putative, expressed	-	-	1.431e-07	-

Source	Gene names
Sma3	At1g72250; At2g22610; GSVIVT00011633001; GSVIVT00015075001; GSVIVT00022835001; GSVIVT00025814001; LOC_Os03g02290; LOC_Os12g42160; OSJNBa0090O10.9; Os03g0114000; Os12g0616000; OsI_09716; OsI_39123; OsJ_09155; OsJ_36881; PHYPADRAFT_153843; POPTRDRAFT_176649

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G22610.1	Di-glucose binding protein with Kinesin motor domain chr2:9599550-9604626 FORWARD LENGTH=1083	9.0e-23	65%
RefSeq	Arabidopsis thaliana	NP_001189577.1	Di-glucose binding protein with Kinesin motor domain [Arabidopsis thaliana]	1.0e-22	65%
RefSeq	Populus trichocarpa	XP_002300478.1	predicted protein, partial [Populus trichocarpa]	6.0e-28	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O81635

Fln msg: Distance to subject end: 412 aas, your sequence is shorter than subject: 76 - 987

Fln protein: RTLEELFRVANERNGLFKYDISVSALEVYNEQIRDLLASPTQPGHTVKKLEVKQVAEGVHHVPGLVEAQVHTMNEV

Protein Length: 77

Fln nts: TCGAACATTGGAGGAGCTCTTTCGTGTAGCTAACGAGAGAAATGGATTATTTAAATACGATATCTCAGTAAGTGCATTGGAAGTTTACAATGAGCAGATTCGTGATCTACTTGCATCCCCAACTCAGCCAGGGCATACTGTTAAAAAGCTTGAAGTAAAGCAGGTAGCAGAAGGTGTCCATCATGTTCCAGGACTTGTTGAAGCACAAGTACACACCATGAATGAGGTTT

Fln Alignment:

GD4IA4404JM8K4___RTLEELFRVANERNGLFKYDISVSALEVYNEQIRDLLASPTQPGHTVKKLEVKQVAEGVHHVPGLVEAQVHTMNEV
O81635_______________RALADLFLLSNQRKDTTSYEISVQMLEIYNEQVRDLLA---QDGQT-KRLEIRNNSHNGINVPEASLVPVSSTDDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain