SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80094

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene80094
CTACAGCTATCGATGGAAAGATAAGCCTGGTCGTATGATCTTGCGGAATCTAGCGTGGAATATAATGCTCCTGGTCTCTGGTGCACTACAATTGCTTGCAGTGCTGATGGAACAAGGCTCTTATCCTGTAAAACTAGTAAAGTACTAAAGATGGTGATTCGTACCTGGTTGAGTGGAATG

Ace file of the UniGene sp_v3.0_unigene80094

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	2.0e-10	69%
FL-Next	sp=Protein TOPLESS; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	WD-40 repeat protein-like	-	-	1.723e-08	-

Source	Gene names
Sma3	Os08g0162100; OsI_27917; OsJ_26138; P0577B11.132; POPTRDRAFT_596940; WD1;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G15750.1	WSIP1, TPL Transducin family protein / WD-40 repeat family protein chr1:5415086-5420359 REVERSE LENGTH=1131	3.0e-12	60%
RefSeq	Arabidopsis thaliana	NP_563981.1	protein TOPLESS [Arabidopsis thaliana]	4.0e-12	60%
RefSeq	Populus trichocarpa	XP_002327405.1	predicted protein [Populus trichocarpa]	5.0e-12	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q94AI7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 546 aas, your sequence is shorter than subject: 60 - 1131

Fln protein: LQLSMER*AWSYDLAESSVEYNAPGLWCTTIACSADGTRLLSCKTSKVLKMVIRTWLSGM

Protein Length: 61

Fln nts: CTACAGCTATCGATGGAAAGATAAGCCTGGTCGTATGATCTTGCGGAATCTAGCGTGGAATATAATGCTCCTGGTCTCTGGTGCACTACAATTGCTTGCAGTGCTGATGGAACAAGGCTCTTATCCTGTAAAACTAGTAAAGTACTAAAGATGGTGATTCGTACCTGGTTGAGTGGAATG

Fln Alignment:

GD4IA4404IDIZW___AWSYDLAESSVEYNAPGLWCTTIACSADGTRLLSCKTSKVLKMVIRTW
Q94AI7_______________AWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain