SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80028

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene80028
AGTTGCTACTGGTGCTAAGGGTATCCCCTACATTGTTCTTCACGATGGCAAAACTATCCGTTACCCAGATCCCCTCATTAAGATTAACGACTCTGTCAAATACTCCATCGAGACAGGAAAAGTGCTCGAATTCCTCAAATTTGAACTCGGAAACTTGGTCATGTGCACTGGAGGTCGTAACTTGGGGCGTGTGGGTGTGATTACCCACAAGGAAAAACATCCTGGTAGCTTTGATATCGTGCACGTTAAGGATGCTTCTGGTTCCCATTTTGCCACCAGAACTTCCAATGTGTTCGTCATTGGAAAGGGATCCAAATCATACGTTTCTCTTCCTCGAGACAAGGGAGTGAAG

Ace file of the UniGene sp_v3.0_unigene80028 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	40S ribosomal protein S4, putative n=1 Tax=Pediculus humanus corporis RepID=E0W344_PEDHC	-	-	4.06377e-44	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	40S ribosomal protein S4	-	-	4.563e-24	-

Source	Gene names
Sma3	AT5G07090; At2g17360; At5g07090; At5g58420; BiRP1; CHLREDRAFT_188837; F5J6.12; GSVIVT00001285001; GSVIVT00024035001; MICPUCDRAFT_36856; MICPUN_90851; MOJ9.26; MQJ2_10; OJ1393_A07.10; OSTLU_18526; Os01g0358400; Os02g0105900; Os05g0368300; OsI_01884; OsI_05

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein chr5:23619599-23620896 FORWARD LENGTH=262	60%
RefSeq	Arabidopsis thaliana	NP_001031846.1	40S ribosomal protein S4-2 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002323021.1	predicted protein, partial [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKK9

Fln msg: Distance to subject end: 18 aas, your sequence is shorter than subject: 117 - 263

Fln protein: VATGAKGIPYIVLHDGKTIRYPDPLIKINDSVKYSIETGKVLEFLKFELGNLVMCTGGRNLGRVGVITHKEKHPGSFDIVHVKDASGSHFATRTSNVFVIGKGSKSYVSLPRDKGVK

Protein Length: 118

Fln nts: AGTTGCTACTGGTGCTAAGGGTATCCCCTACATTGTTCTTCACGATGGCAAAACTATCCGTTACCCAGATCCCCTCATTAAGATTAACGACTCTGTCAAATACTCCATCGAGACAGGAAAAGTGCTCGAATTCCTCAAATTTGAACTCGGAAACTTGGTCATGTGCACTGGAGGTCGTAACTTGGGGCGTGTGGGTGTGATTACCCACAAGGAAAAACATCCTGGTAGCTTTGATATCGTGCACGTTAAGGATGCTTCTGGTTCCCATTTTGCCACCAGAACTTCCAATGTGTTCGTCATTGGAAAGGGATCCAAATCATACGTTTCTCTTCCTCGAGACAAGGGAGTGAAG

Fln Alignment:

GD4IA4404JON8J___VATGAKGIPYIVLHDGKTIRYPDPLIKINDSVKYSIETGKVLEFLKFELGNLVMCTGGRNLGRVGVITHKEKHPGSFDIVHVKDASGSHFATRTSNVFVIGKGSKSYVSLPRDKGVK
A9NKK9_______________VQFGDKGIPYLNTYDGRTIRYPDPLVKANDTIKIDLETGKIKEFIKFDVGNVVMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVFTIGKGTKPWVSLPKGKGVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain