SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene80005

Length: 286 nt

UniGene Fasta

>sp_v3.0_unigene80005
TTGATGGAATTATTATTTATGCTGCAGCACATGGAAAACGCATATCCAGGATCGAACATCTTGGTTGTAACAGTCACAGACGAGGAATCGAAGCGGGTAGAGGCACAGAGCGAAGAAGAGACAAAAGCAGAAGCAATGGTGGTGCTCAGAAAAATGTTCGGCGATGGCATTCCCGAAGCAGAGCAAATTCTGGTTCCAAAATGGTGGAGCAACCGGTTTCAGAGAGGGAGCTACAGTAATTATCCTATTTTGGTGGACAAGAAGCATTTCCACGACATAAGGGTAA

Ace file of the UniGene sp_v3.0_unigene80005

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyamine oxidase, putative n=1 Tax=Ricinus communis RepID=B9RVL4_RICCO	-	-	4.0e-30	74%
FL-Next	sp=Polyamine oxidase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Polyamine oxidase	-	-	5.381e-22	-

Source	ECs	Term	Type	e value	Identity
Sma3	Transferred entry: 1.5.3.13, 1.5.3.14, 1.5.3.15, 1.5.3.16 and 1.5.3.17.	EC:1.5.3.11	-	6.434e-08	-

Source	Gene names
Sma3	At5g13700; GSVIVT00002692001; GSVIVT00002694001; GSVIVT00002696001; GSVIVT00002697001; GSVIVT00028738001; LOC_Os03g09810; MSH12.17; OJ1759_F09.3; OJ1759_F09.8; OSJNBa0064E16.17; Os03g0193400; Os09g0368200; Os09g0368500; OsI_10361; OsI_31092; OsI_31096; Os

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	primary amine oxidase activity	GO:0008131	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	polyamine oxidase activity	GO:0046592	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Flavin amine oxidase	IPR001613	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13700.1	ATPAO1, APAO, PAO1 polyamine oxidase 1 chr5:4420222-4422974 REVERSE LENGTH=472	9.0e-36	69%
RefSeq	Arabidopsis thaliana	NP_196874.1	Polyamine oxidase 1 [Arabidopsis thaliana]	1.0e-35	69%
RefSeq	Populus trichocarpa	XP_002299932.1	predicted protein [Populus trichocarpa]	2.0e-37	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FNA2

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 95 - 472

Fln protein: LMELLFMLQHMENAYPGSNILVVTVTDEESKRVEAQSEEETKAEAMVVLRKMFGDGIPEAEQILVPKWWSNRFQRGSYSNYPILVDKKHFHDIRV

Protein Length: 96

Fln nts: TTGATGGAATTATTATTTATGCTGCAGCACATGGAAAACGCATATCCAGGATCGAACATCTTGGTTGTAACAGTCACAGACGAGGAATCGAAGCGGGTAGAGGCACAGAGCGAAGAAGAGACAAAAGCAGAAGCAATGGTGGTGCTCAGAAAAATGTTCGGCGATGGCATTCCCGAAGCAGAGCAAATTCTGGTTCCAAAATGGTGGAGCAACCGGTTTCAGAGAGGGAGCTACAGTAATTATCCTATTTTGGTGGACAAGAAGCATTTCCACGACATAAGGGTAA

Fln Alignment:

GD4IA4404I0YLV___QHMENAYPGSNILVVTVTDEESKRVEAQSEEETKAEAMVVLRKMFGDGIPEAEQILVPKWWSNRFQRGSYSNYPILVDKKHFHDIR
Q9FNA2_______________QHMENAYPGSNILVVTLTNEQSKRVEAQSDQETMKEAMSVLRDMFGATIPYATDILVPRWWNNRFQRGSYSNYPMISDNQLLQNIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain