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UniGene Name: sp_v3.0_unigene79969
Length: 125 nt
 UniGene Fasta
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| >sp_v3.0_unigene79969
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Ace file of the UniGene sp_v3.0_unigene79969
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | R2r3-myb transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SHV5_RICCO | - | - | 3.0e-10 | 96% |
| FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 65% |
| Sma3 | Transcription factor GAMYB | - | - | 1.156e-10 | - |
| Source | Gene names |
|---|---|
| Sma3 | At2g32460; At3g11440; At5g06100; At5g06100/K16F4_6; At5g55020; F24K9.11; FcMYB811; GAM1; GAMyb; GSVIVT00001720001; GSVIVT00017281001; GSVIVT00025883001; GSVIVT00027308001; Gam1; Gamyb; LOC_Os03g38210; MYB007; MYB012; MYB096; MYB101; MYB110; MYB120; MYB124 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | sequence-specific DNA binding transcription factor activity | GO:0003700 | Molecular Function | 0.0 | - |
| Sma3 | catalytic activity | GO:0003824 | Molecular Function | 0.0 | - |
| Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
| Sma3 | response to ethylene stimulus | GO:0009723 | Biological Process | 0.0 | - |
| Sma3 | gibberellic acid mediated signaling pathway | GO:0009740 | Biological Process | 0.0 | - |
| Sma3 | response to salicylic acid stimulus | GO:0009751 | Biological Process | 0.0 | - |
| Sma3 | positive regulation of abscisic acid mediated signaling pathway | GO:0009789 | Biological Process | 0.0 | - |
| Sma3 | flower development | GO:0009908 | Biological Process | 0.0 | - |
| Sma3 | cell differentiation | GO:0030154 | Biological Process | 0.0 | - |
| Sma3 | GO:0045449 | Biological Process | 0.0 | - | |
| Sma3 | pollen sperm cell differentiation | GO:0048235 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | SANT/Myb domain | IPR001005 | - | 0.0 | - |
| Sma3 | Phosphoglycerate/bisphosphoglycerate mutase, active site | IPR001345 | - | 0.0 | - |
| Sma3 | IPR012287 | - | 0.0 | - | |
| Sma3 | IPR014778 | - | 0.0 | - | |
| Sma3 | Myb transcription factor | IPR015495 | - | 0.0 | - |
| Sma3 | Transcription factor, GAMYB | IPR016310 | - | 0.0 | - |
| Sma3 | Myb domain, DNA-binding | IPR017930 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT3G11440.1 | ATMYB65, MYB65 myb domain protein 65 chr3:3603056-3604929 FORWARD LENGTH=553 | 2.0e-13 | 86% |
| RefSeq | Arabidopsis thaliana | NP_187751.1 | myb domain protein 65 [Arabidopsis thaliana] | 2.0e-13 | 86% |
| RefSeq | Populus trichocarpa | XP_002297703.1 | predicted protein, partial [Populus trichocarpa] | 4.0e-15 | 96% |
| Full-Lengther Next Prediction |
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Fln status: Putative N-terminus
Fln database: coniferopsida.fasta
Fln subject: C0PSI2
Fln msg: Distance to subject end: 440 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 41 - 481
Fln protein:
V
Protein Length:
42
Fln nts:
A
Fln Alignment:
GD4IA4404IOBZJ___LKKGPWTSAEDAILVEYVKKHGEGNWNAV
C0PSI2_______________LKKGPWTPEEDQILISYINKHGHGNWRAL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
