SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79848

Length: 295 nt

UniGene Fasta

>sp_v3.0_unigene79848
TAAGGTAGTTTGTAGGTCTAGTCTTTGTCGTAAGGTAGTCTTTAGTAGTAGGTAGTATTCTATTATTTTAGTTGTTTGTCTAGAGACAGGAGGCCATCTGAGTGCAAGCCTGGGTGTTGTGGACCTCACAGTTGCACTCCACTATGTATTCAACACTCCACATGATAAAATTGTGTGGGATGTAGGCCACCAGTCTTATCCACATAAAATATTGACAGGAAGGAGGTACAAAAATGAGCACCTTGAGACAAACTTCTGGTATAGCAGGCTTCCCTAGGCGCGTCGAAAGTGAACA

Ace file of the UniGene sp_v3.0_unigene79848

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	1-deoxy-D-xylulose 5-phosphate synthase type II n=1 Tax=Picea abies RepID=A7LA02_PICAB	-	-	5.0e-28	87%
FL-Next	tr=1-deoxy-D-xylulose 5-phosphate synthase type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	87%
Sma3	1-deoxy-D-xylulose 5-phosphate synthase	-	-	3.757e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	1-deoxy-D-xylulose-5-phosphate synthase.	EC:2.2.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Terpenoid backbone biosynthesis	00900	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At3g21500; At4g15560; CHLREDRAFT_196568; CLA1; DEF; DXPS; DXS; DXS1; DXS2; DXS2A; DXS2B; Dxs; Dxs1; GSVIVT00009953001; GSVIVT00011627001; GSVIVT00019845001; GSVIVT00031403001; GSVIVT00031458001; GSVIVT00031462001; GSVIVT00032595001; HbDXS1; HbDXS2; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	1-deoxy-D-xylulose-5-phosphate synthase activity	GO:0008661	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	thiamine biosynthetic process	GO:0009228	Biological Process	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	terpenoid biosynthetic process	GO:0016114	Biological Process	-
Sma3	isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0019288	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Deoxyxylulose-5-phosphate synthase	IPR005477	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G21500.2	DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 chr3:7573907-7576594 REVERSE LENGTH=641	1.0e-24	69%
RefSeq	Arabidopsis thaliana	NP_850620.2	1-deoxy-D-xylulose 5-phosphate synthase 1 [Arabidopsis thaliana]	1.0e-24	69%
RefSeq	Populus trichocarpa	XP_002312717.1	predicted protein [Populus trichocarpa]	6.0e-24	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7LA02

Fln msg: Overlapping hits, possible frame ERROR between 232 and 228, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 546 aas, your sequence is shorter than subject: 98 - 746

Fln protein: KVVCRSSLCRKVVFSSR*YSIILVVCLETGGHLSASLGVVDLTVALHYVFNTPHDKIVWDVGHQSYPHKILTGRRxxxMSTLRQTSGIAGFPRRVESE

Protein Length: 99

Fln nts: TAAGGTAGTTTGTAGGTCTAGTCTTTGTCGTAAGGTAGTCTTTAGTAGTAGGTAGTATTCTATTATTTTAGTTGTTTGTCTAGAGACAGGAGGCCATCTGAGTGCAAGCCTGGGTGTTGTGGACCTCACAGTTGCACTCCACTATGTATTCAACACTCCACATGATAAAATTGTGTGGGATGTAGGCCACCAGTCTTATCCACATAAAATATTGACAGGAAGGAGGxxxxxxxxxATGAGCACCTTGAGACAAACTTCTGGTATAGCAGGCTTCCCTAGGCGCGTCGAAAGTGAACA

Fln Alignment:

GD4IA4404I9RGB___ILVVCLETGGHLSASLGVVDLTVALHYVFNTPHDKIVWDVGHQSYPHKILTGRRxxMSTLRQTSGIAGFPRRVESE
A7LA02_______________IIFSVAETGGHLSASLGVVDLTVALHYVFNTPHDKVVWDVGHQSYPHKILTGRRxxMGTMRQTSGLAGFPRRVESE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain