SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79821

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene79821
TCGCATGTGATCCTTCAGGTCCTGCCACGATGCTGATGAAGGTAATCCTGTCACAACAACGCGATAGTACCTGAAGGATCACATGCGACGGGCTGGTGATGTCTGCTATGCTGAAGTGTTTCGTGATAGCAATGGTACACGTGGAACTGTGGACTACACCAACCTCGAGGACATGAAATATGCTATCAGGAAACTGGATGATACTGAATTCCGGAATGCCTTCTCTCGA

Ace file of the UniGene sp_v3.0_unigene79821

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SAR0_RICCO	-	-	3.0e-18	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Sma3	Arginine/serine-rich splicing factor, putative	-	-	9.272e-14	-

Source	Gene names
Sma3	AT4G02430; AT4g02430; At1g02840; At1g02840/F22D16_30; At1g09140; At3g49430; At4g02430; At4g02430/T14P8_21; F22D16.16; F22D16_30; GSVIVT00027992001; GSVIVT00037180001; LOC_Os03g22380; Os01g0316600; Os03g0344100; Os05g0364600; Os07g0673500; OsI_01613; OsI_1

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	interchromatin granule	GO:0035061	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49430.1	SRp34a, SR34a, At-SR34a SER/ARG-rich protein 34A chr3:18332668-18334829 FORWARD LENGTH=300	6.0e-24	79%
RefSeq	Arabidopsis thaliana	NP_001078264.1	putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]	8.0e-24	79%
RefSeq	Populus trichocarpa	XP_002302710.1	predicted protein, partial [Populus trichocarpa]	2.0e-24	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8LNB5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 80 aas, your sequence is shorter than subject: 76 - 263

Fln protein: RM*SFRSCHDADEGNPVTTTR*YLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDTEFRNAFSR

Protein Length: 77

Fln nts: TCGCATGTGATCCTTCAGGTCCTGCCACGATGCTGATGAAGGTAATCCTGTCACAACAACGCGATAGTACCTGAAGGATCACATGCGACGGGCTGGTGATGTCTGCTATGCTGAAGTGTTTCGTGATAGCAATGGTACACGTGGAACTGTGGACTACACCAACCTCGAGGACATGAAATATGCTATCAGGAAACTGGATGATACTGAATTCCGGAATGCCTTCTCTCGA

Fln Alignment:

GD4IA4404I56B8___LKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDTEFRNAFSR
B8LNB5_______________LKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDSEFRNAFSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain