SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79767

Length: 396 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene79767
GTATCAAGGGGCGTCTCAACCGTCTGCCGTCGGCTTGTGTCGGCGATATGGTCATGGCCACCGTCAAGAAGGGTAAACCCGATCTCCGTAAGAAAGTCTTGCCCGCCGTCGTCGTCCGCCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTGTTCATGTACTTTGAAGATAATGCCGGTGTGATTGTCAATCCAAAGGGGGAAATGAAAGGGTCTGCTATTACCGGTCCCATTGGAAAGGAGTGTGCCGACCTGTGGCCAAGAATTGCAAGTGCTGCCAACGCTATCGTCTGAGATTGTTTTCTGTCGTTTTTGTTAGAACTTTGTTTCGGTAGTCCTTCGGATTCAAGTTTGTGTGACAATTCTGTTTGTGTTTAAATGAAATCGACATTTCTAG

Ace file of the UniGene sp_v3.0_unigene79767 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein L17 [Castanea sativa]	-	-	0.0	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Sma3	60S ribosomal protein L23, putative	-	-	7.691e-13	-

Source	Gene names
Sma3	At1g04480; CHLREDRAFT_159282; F19P19.5; GSVIVT00020335001; GSVIVT00028518001; LOC_Os03g04590; LOC_Os10g32920; MICPUCDRAFT_37554; MICPUN_90970; OJ1293_E04.23; OSJNBa0006L06.7; OSTLU_18267; Os02g0814700; Os03g0139100; Os10g0466700; OsI_09417; OsI_09939; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L14b/L23e	IPR000218	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G04400.1	emb2171 Ribosomal protein L14p/L23e family protein chr3:1167339-1168308 FORWARD LENGTH=140	98%
RefSeq	Arabidopsis thaliana	NP_001189805.1	60S ribosomal protein L23 [Arabidopsis thaliana]	98%
RefSeq	Populus trichocarpa	XP_002335793.1	predicted protein [Populus trichocarpa]	97%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS49

Fln msg: your sequence is shorter than subject: 97 - 140

Fln protein: IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV*

Protein Length: 98

Fln nts: GTATCAAGGGGCGTCTCAACCGTCTGCCGTCGGCTTGTGTCGGCGATATGGTCATGGCCACCGTCAAGAAGGGTAAACCCGATCTCCGTAAGAAAGTCTTGCCCGCCGTCGTCGTCCGCCAGCGCAAGCCATGGCGCCGAAAGGACGGTGTGTTCATGTACTTTGAAGATAATGCCGGTGTGATTGTCAATCCAAAGGGGGAAATGAAAGGGTCTGCTATTACCGGTCCCATTGGAAAGGAGTGTGCCGACCTGTGGCCAAGAATTGCAAGTGCTGCCAACGCTATCGTCTGA___GATTGTTTTCTGTCGTTTTTGTTAGAACTTTGTTTCGGTAGTCCTTCGGATTCAAGTTTGTGTGACAATTCTGTTTGTGTTTAAATGAAATCGACATTTCTAG

Fln Alignment:

GD4IA4404H50J0___IKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
A9NS49_______________IKGRLNRLPAACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain