SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79756

Length: 384 nt

UniGene Fasta

>sp_v3.0_unigene79756
TGTCCTACCTAATGATCCACAAAACGACAACTATTATCCGTTCGTGCATCTTCTGCCCAACGGAAATCTTTATATTTTCGCGAACAGAGATTCCATTGAATTGAATTACAATACCCGGGCCGTTGTCCGCAATTTCCCTACCATACCTGGGGAGCCAAGAAATTACCCTTCGGGGGGCAGCTCGGTGCTTCTCCCGCTTGACGGCCCGAGCCGTTACCAGGCTGCCGAGGTCCTTGTCTGTGGAGGGGCCCAGTTTGGGGCCTTTCGACAGCCCGCCAAACAACTTCTGACCTCTCCGTCGTGCGGCAGAATGGTGATCACCGCGAAGGCCCCTGCTTGGGCCATGTCGAATATGCCCATGAGACGATGCATGGGCGATATGAT

Ace file of the UniGene sp_v3.0_unigene79756

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase [Vitis pseudoreticulata]	-	-	2.0e-30	52%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	64%
Sma3	Glyoxal oxidase	-	-	2.106e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactose oxidase.	EC:1.1.3.9	-	4.555e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		4.555e-15	%

Source	Gene names
Sma3	AT3G53950; At1g19900; At3g53950; At3g53950/F5K20_250; F14L17.20; F5K20_250; F6F9.4; GSVIVT00000516001; GSVIVT00014487001; GSVIVT00015939001; GSVIVT00016700001; GSVIVT00021405001; GSVIVT00028985001; GSVIVT00031092001; LOC_Os03g15320; LOC_Os11g06870; Mmp15;

Source	GOs	Term	Type	e value	Identity
Sma3	galactose oxidase activity	GO:0045480	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G53950.1	glyoxal oxidase-related protein chr3:19975704-19977341 FORWARD LENGTH=545	2.0e-34	49%
RefSeq	Arabidopsis thaliana	NP_190963.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	3.0e-34	49%
RefSeq	Populus trichocarpa	XP_002328372.1	predicted protein [Populus trichocarpa]	1.0e-36	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TK29

Fln msg: Distance to subject end: 211 aas, your sequence is shorter than subject: 127 - 534

Fln protein: VLPNDPQNDNYYPFVHLLPNGNLYIFANRDSIELNYNTRAVVRNFPTIPGEPRNYPSGGSSVLLPLDGPSRYQAAEVLVCGGAQFGAFRQPAKQLLTSPSCGRMVITAKAPAWAMSNMPMRRCMGDM

Protein Length: 128

Fln nts: TGTCCTACCTAATGATCCACAAAACGACAACTATTATCCGTTCGTGCATCTTCTGCCCAACGGAAATCTTTATATTTTCGCGAACAGAGATTCCATTGAATTGAATTACAATACCCGGGCCGTTGTCCGCAATTTCCCTACCATACCTGGGGAGCCAAGAAATTACCCTTCGGGGGGCAGCTCGGTGCTTCTCCCGCTTGACGGCCCGAGCCGTTACCAGGCTGCCGAGGTCCTTGTCTGTGGAGGGGCCCAGTTTGGGGCCTTTCGACAGCCCGCCAAACAACTTCTGACCTCTCCGTCGTGCGGCAGAATGGTGATCACCGCGAAGGCCCCTGCTTGGGCCATGTCGAATATGCCCATGAGACGATGCATGGGCGATATGAT

Fln Alignment:

GD4IA4404J1IZI___NDPQNDNYYPFVHLLPNGNLYIFANRDSIELNYNTRAVVRNFPTIPGEPRNYPSGGSSVLLPLDGPSRYQAAEVLVCGGAQFGAFRQPAKQLLTSPSCGRMVITAKAPAWAMSNMPMRRCMGDM
A9TK29_______________NDDQNDNLYPYVHLLPNGNLYIFANRDSIEYDYSTDTVVRTFPQIPGEPRNYPSAGSSVILPLLATNNFSVVEVLVCGGAQYGAYLNSISQMPCSSTCGRIVVSDPNPTWVMDNMPFPRCMGDM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain