SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79737

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene79737
GTTTACTAGGATCAAACGCACATCTATAGAAGCTTCCATCTAGGCCAACAATGAAGCAACAGATCAGGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCAGAGGATGAGGAGCCTTTAAATGATGATGATGATGATCCAGATGACTTAGATCAAAATGTGTCACGGACCAAGAATAGATGGAAATGTATTCTAAAAGNTGGTGTAATGCATCT

Ace file of the UniGene sp_v3.0_unigene79737

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TFIIA domain containing protein	-	-	3.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	GOs	Term	Type	Identity
Sma3	transcription factor TFIIA complex	GO:0005672	Cellular Component	-
Sma3	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	-
Sma3	transcription initiation from RNA polymerase II promoter	GO:0006367	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor IIA, alpha/beta subunit	IPR004855	-	-
Sma3	Transcription factor IIA, beta-barrel	IPR009088	-	-
Sma3	Transcription factor IIA, alpha subunit, N-terminal	IPR013028	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX18

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 16 aas, your sequence is shorter than subject: 73 - 398

Fln protein: FTRIKRTSIEASI*ANNEATDQEKQALNDVATSKVSEDEEPLNDDDDDPDDLDQNVSRTKNRWKCILKDGVMH

Protein Length: 74

Fln nts: GTTTACTAGGATCAAACGCACATCTATAGAAGCTTCCATCTAGGCCAACAATGAAGCAACAGATCAGGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCAGAGGATGAGGAGCCTTTAAATGATGATGATGATGATCCAGATGACTTAGATCAAAATGTGTCACGGACCAAGAATAGATGGAAATGTATTCTAAAAGaTGGTGTAATGCATCT

Fln Alignment:

GD4IA4404IUJY2___EATDQEKQALNDVATSKVSXXXXXXXXXXXXXXXXX----------------QNVSRTKNRWKCILKDGVMH
A9NX18_______________EATDQEQQALNDVATSKVSEDEEALNDNDDDPDDLDLTNEDPKIDDLVLAQFEKVSRTKNRWKCILKDGVMH

SSRs (tot: 1)

Start position	End position	Sequence	Length
129	145	ATG ATG ATG ATG ATG AT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain