SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79720

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene79720
AAGGTCGGACGCGTTGTCATCATCACCCGGGGCCGCTACGCCGGAAAGAAGTGCGTGATCATCTCACCACTTGACAACGGCACCAAGTCGCACCCCTTCCCCCACGCGCTCGTTGCCGGTATCGAGACCTACCCCTCCAAGGTCACCCGCCGCATGTCAAAGACCAAGCAGGCCAAGAAGAGCAAGGTCAAGCCTTTCGTCAAGCAGGTCAACTACACCCA

Ace file of the UniGene sp_v3.0_unigene79720

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L27-B n=4 Tax=Pleosporineae RepID=B2VT56_PYRTR	-	-	2.0e-27	84%
FL-Next	sp=60S ribosomal protein L27; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	60S ribosomal protein L27	-	-	5.477e-21	-

Source	Gene names
Sma3	At3g22230; At4g15000; MICPUN_107054; MKA23.13; POPTRDRAFT_560241; POPTRDRAFT_824991; RPL27; RPL27B; RPL27C; Rpl27; THAPSDRAFT_30154;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L27e	IPR001141	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L27e, conserved site	IPR018262	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15000.1	Ribosomal L27e protein family chr4:8571896-8572303 FORWARD LENGTH=135	1.0e-15	55%
RefSeq	Arabidopsis thaliana	NP_001078392.1	60S ribosomal protein L27-3 [Arabidopsis thaliana]	1.0e-15	55%
RefSeq	Populus trichocarpa	XP_002323180.1	predicted protein [Populus trichocarpa]	1.0e-15	55%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQ84

Fln msg: Distance to subject end: 56 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 73 - 135

Fln protein: KVGRVVIITRGRYAGKKCVIISPLDNGTKSHPFPHALVAGIETYPSKVTRRMSKTKQAKKSKVKPFVKQVNYT

Protein Length: 74

Fln nts: AAGGTCGGACGCGTTGTCATCATCACCCGGGGCCGCTACGCCGGAAAGAAGTGCGTGATCATCTCACCACTTGACAACGGCACCAAGTCGCACCCCTTCCCCCACGCGCTCGTTGCCGGTATCGAGACCTACCCCTCCAAGGTCACCCGCCGCATGTCAAAGACCAAGCAGGCCAAGAAGAGCAAGGTCAAGCCTTTCGTCAAGCAGGTCAACTACACCCA

Fln Alignment:

GD4IA4404IX60G___KVGRVVIITRGRYAGKKCVIISPLDNGTKSHPFPHALVAGIETYPSKVTRRMSXXXXXXXXXXXPFVKQVNY
A9NQ84_______________KQNKVVVLLQGRFAGRKAVIIKTFDDGTAGRAYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRLKAFIKVVNY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain