SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79687

Length: 253 nt

UniGene Fasta

>sp_v3.0_unigene79687
GCGCCAAGAAGTGTTTAAGATGGAAGCTTTGAAAGATGCTACAAACAATTTTCAGGAGGACAGGAAGGTTGGGGAGGGCGGATTTGGCGCTGTCTACAAGGGGACCCACGACGGAAAACAAATAGCTGTGAAGAAGATGTCGTTAACATCTAACAAAGGAAGGAAAGTATTTATGAATGAAAAGCTGCTTGCAGAAGTTCAGCATCGGAATTTAGTGAACCTACTCGGCTCCTGCGAACAGGAGTCAGAAGGG

Ace file of the UniGene sp_v3.0_unigene79687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative serine/threonine kinase [Arabidopsis thaliana]	-	-	8.0e-17	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Chromosome chr19 scaffold_4, whole genome shotgun sequence	-	-	1.624e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	2.551e-06	-
Sma3	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	1.603e-06	-

Source	Gene names
Sma3	A_TM018A10.18; Ark1; At1g11280; At1g11280/T28P6.7; At1g61360; At1g61490; At1g65790; At1g65800; At4g00970; At4g21400; BcRK3; CRK28; CRK41; F18E5.20; F5A18.8; GSVIVT00002629001; GSVIVT00005156001; GSVIVT00005183001; GSVIVT00005602001; GSVIVT00005603001; GSV

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	chitinase activity	GO:0004568	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	chitin catabolic process	GO:0006032	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Cadherin	IPR002126	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Chitinase II	IPR011583	-	-
Sma3		IPR012335	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G61500.1	S-locus lectin protein kinase family protein chr1:22689729-22692881 REVERSE LENGTH=804	2.0e-21	51%
RefSeq	Arabidopsis thaliana	NP_564777.1	S-locus lectin protein kinase-like protein [Arabidopsis thaliana]	2.0e-21	51%
RefSeq	Populus trichocarpa	XP_002311515.1	predicted protein, partial [Populus trichocarpa]	4.0e-24	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLN9

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 84 - 565

Fln protein: RQEVFKMEALKDATNNFQEDRKVGEGGFGAVYKGTHDGKQIAVKKMSLTSNKGRKVFMNEKLLAEVQHRNLVNLLGSCEQESEG

Protein Length: 85

Fln nts: GCGCCAAGAAGTGTTTAAGATGGAAGCTTTGAAAGATGCTACAAACAATTTTCAGGAGGACAGGAAGGTTGGGGAGGGCGGATTTGGCGCTGTCTACAAGGGGACCCACGACGGAAAACAAATAGCTGTGAAGAAGATGTCGTTAACATCTAACAAAGGAAGGAAAGTATTTATGAATGAAAAGCTGCTTGCAGAAGTTCAGCATCGGAATTTAGTGAACCTACTCGGCTCCTGCGAACAGGAGTCAGAAGGG

Fln Alignment:

GD4IA4404JAL4D___VFKMEALKDATNNFQEDRKVGEGGFGAVYKG-THDGKQIAVKKMSLTSNKGRKVFMNE-KLLAEVQHRNLVNLLGSCEQESE
B8LLN9_______________VFEMETLVAATENFHDNNKIGEGGFGAVYKGITPEGNEIVVKRPSLNSRHATEVYLNEANLVPKIQHRNLVKLLGCCQEGPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain