SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79672

Length: 277 nt

UniGene Fasta

>sp_v3.0_unigene79672
CCCTGGCTGGAAATATTTCAATGCGAAGAGGAACACCCTTAAGCTCCCAGTGAGAATATTTTGTAAAACAAAATGTGCCTTTGGATTGCTTGAGCAGCCGTATTGGAGAACTTTTGGAAGAAATTCAAAAGGATATGTTTGAAAGGGCAAAGGTTAAAAGAGATTCGTGCATTGTGAAGGCTGAGAGTTGGGATGAATTTATTAATTCCCTCAATAACAAAATGATGGTTCTTGCCCCTTGGTGCGATGAAGTGGATGTTGAGGAGGATGTGAAAGC

Ace file of the UniGene sp_v3.0_unigene79672

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	prolyl-tRNA synthetase [Arabidopsis thaliana] ref\|NP_850736.1\| prolyl-tRNA synthetase [Arabidopsis thaliana] emb\|CAB71872.1\| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gb\|AAL24294.1\| multifunctional aminoacyl-tRNA ligase-lik	-	-	2.0e-16	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%

Source	Gene names
Sma3	PHYPADRAFT_113773;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	proline-tRNA ligase activity	GO:0004827	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	prolyl-tRNA aminoacylation	GO:0006433	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Prolyl-tRNA synthetase, class IIa	IPR002316	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Prolyl-tRNA synthetase, class IIa, archaeal-type	IPR004499	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	Prolyl-tRNA synthetase, class II, C-terminal	IPR016061	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62120.1	Class II aaRS and biotin synthetases superfamily protein chr3:23001227-23003849 REVERSE LENGTH=530	3.0e-21	52%
RefSeq	Arabidopsis thaliana	NP_850736.1	prolyl-tRNA synthetase [Arabidopsis thaliana]	4.0e-21	52%
RefSeq	Populus trichocarpa	XP_002320936.1	predicted protein [Populus trichocarpa]	1.0e-19	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRH6

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 47 - 70

Fln protein: MFERAKVKRDSCIVKAESWDEFINSLNNKMMVLAPWCDEVDVEEDVK

Protein Length: 48

Fln nts: CCCTGGCTGGAAATATTTCAATGCGAAGAGGAACACCCTTAAGCTCCCAGTGAGAATATTTTGTAAAACAAAATGTGCCTTTGGATTGCTTGAGCAGCCGTATTGGAGAACTTTTGGAAGAAATTCAAAAGGAT_-_ATGTTTGAAAGGGCAAAGGTTAAAAGAGATTCGTGCATTGTGAAGGCTGAGAGTTGGGATGAATTTATTAATTCCCTCAATAACAAAATGATGGTTCTTGCCCCTTGGTGCGATGAAGTGGATGTTGAGGAGGATGTGAAAGC

Fln Alignment:

GD4IA4404JGKUZ___INSLNNKMMVLAPWCDEVDVEEDVK
A9NRH6_______________MHALNSKMMVLAPWCDEVDVEEDVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain