SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79531

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene79531
AACGTTTCGTTTGCAACGCAACAGTATCGTGTGCTGACATACTCGCTATAGCCGCACAGCAGTCCGTCTCACTGTCTGGTGGTCCGTCATGGACTGTGCAGTTAGGGAGACGAGATAGCACGACCGCCAGTTCAACTCTTCCCAACACAGCCCTTCCTGGACCGACGGATTCGCTGTCCACTATCATAACAAAGTTCTCTAATG

Ace file of the UniGene sp_v3.0_unigene79531

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Class III peroxidase 88 n=3 Tax=Oryza sativa RepID=Q5Z7K0_ORYSJ	-	-	1.0e-16	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	Peroxidase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT3G32980; AoPOX1; At1g49570; At2g18140; At3g32980; At5g05340; At5g06720; F14J22.19; F8D23.8; FBP5; GSVIVT00015157001; GSVIVT00015158001; GSVIVT00015159001; GSVIVT00015160001; GSVIVT00018769001; GSVIVT00018771001; GSVIVT00023967001; GSVIVT00023970001; GSV

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Thymidylate kinase, conserved site	IPR018095	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G06720.1	ATPA2, PA2 peroxidase 2 chr5:2077567-2078857 REVERSE LENGTH=335	4.0e-19	58%
RefSeq	Arabidopsis thaliana	NP_196290.1	peroxidase 53 [Arabidopsis thaliana]	5.0e-19	58%
RefSeq	Populus trichocarpa	XP_002320417.1	predicted protein [Populus trichocarpa]	1.0e-21	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NN21

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 67 - 324

Fln protein: RFVCNATVSCADILAIAAQQSVSLSGGPSWTVQLGRRDSTTASSTLPNTALPGPTDSLSTIITKFSN

Protein Length: 68

Fln nts: AACGTTTCGTTTGCAACGCAACAGTATCGTGTGCTGACATACTCGCTATAGCCGCACAGCAGTCCGTCTCACTGTCTGGTGGTCCGTCATGGACTGTGCAGTTAGGGAGACGAGATAGCACGACCGCCAGTTCAACTCTTCCCAACACAGCCCTTCCTGGACCGACGGATTCGCTGTCCACTATCATAACAAAGTTCTCTAATG

Fln Alignment:

GD4IA4404IZ27Q___CNATVSCADILAIAAQQSVSLSGGPSWTVQLGRRDSTTASSTLPNTALPGPTDSLSTIITKF
A9NN21_______________CSATVSCADILAIAAERSVSMSGGPSWNVQLGRRDSTTANATLVKTAFASPTDSLSTIITKF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain