SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79481

Length: 251 nt

UniGene Fasta

>sp_v3.0_unigene79481
CTGATAGTACCCTTAACAAGCTTTTCACATTGCGGGAATATGTAGATGACACAGAGGACTATATCAACATTATGTTAGATGACAAACAAAACCAGCTTCTACAAATGGGTTTGATGATGACCTGGGACGCTTGTTATGAGTGCATTTCTCGTTGTTACAGGAGTTTTTGGCTCCAACATTAGGATTTCACTCTTTAATGATGGTGGACTTCCTCAGTTTTTATGGGTTGTTTGTGGAACCGGCTCATGTGT

Ace file of the UniGene sp_v3.0_unigene79481

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	magnesium transporter MRS2-3 [Arabidopsis thaliana] sp\|Q9LJN2.1\|MRS23_ARATH RecName: Full=Magnesium transporter MRS2-3; AltName: Full=Magnesium Transporter 4; Short=AtMGT4 dbj\|BAB02549.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN17435.1\| unkno	-	-	3.0e-19	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Magnesium transporter	-	-	1.103e-21	-

Source	Gene names
Sma3	At3g19640; At5g09690; At5g64560; B1417F08.35; GSVIVT00001499001; GSVIVT00019261001; GSVIVT00020125001; GSVIVT00023860001; LOC_Os03g53110; MGT7; MRS2-2; MRS2-3; MRS2-7; OJ1365_D05.9; OSIGBa0160I14.4; OSJNBa0084A10.4; Os01g0869200; Os01g0908500; Os03g074240

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G19640.1	MGT4, MRS2-3 magnesium transporter 4 chr3:6820969-6823104 FORWARD LENGTH=484	2.0e-21	85%
RefSeq	Arabidopsis thaliana	NP_188598.2	magnesium transporter MRS2-3 [Arabidopsis thaliana]	3.0e-21	85%
RefSeq	Populus trichocarpa	XP_002313918.1	magnesium transporter, partial [Populus trichocarpa]	1.0e-22	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQE7

Fln msg: Separated hits, possible frame ERROR between 122 and 124, Distance to subject end: 18 aas, your sequence is shorter than subject: 83 - 483

Fln protein: DSTLNKLFTLREYVDDTEDYINIMLDDKQNQLLQMGLMMxxGTLVMSAFLVVTGVFGSNIRISLFNDGGLPQFLWVVCGTGSC

Protein Length: 84

Fln nts: CTGATAGTACCCTTAACAAGCTTTTCACATTGCGGGAATATGTAGATGACACAGAGGACTATATCAACATTATGTTAGATGACAAACAAAACCAGCTTCTACAAATGGGTTTGATGATGACxxxTGGGACGCTTGTTATGAGTGCATTTCTCGTTGTTACAGGAGTTTTTGGCTCCAACATTAGGATTTCACTCTTTAATGATGGTGGACTTCCTCAGTTTTTATGGGTTGTTTGTGGAACCGGCTCATGTGT

Fln Alignment:

GD4IA4404H7893___DSTLNKLFTLREYVDDTEDYINIMLDDKQNQLLQMGLMMTxGTLVMSAFLVVTGVFGSNIRISLFNDGGLPQFLWVVCGTGSC
B8LQE7_______________DSTLNKLFTLREYVEDTEDYINIMLDDKQNHLLQMGVMMTxGTLVMSAFLVVTGIFGMNIQISLFDDGGLPQFLWVVGGTGSC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain