SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79451

Length: 285 nt

UniGene Fasta

>sp_v3.0_unigene79451
TTGGAATGCAGTACCATTGGAAAAATCGTGACTATAAGAGCTTTGATGATTTTTTAATGGACTTGAAGCAGAGCAAAAGAAAAACTATTCGGCAAGAGCGCAAAAAGATTCTAGCCTCAAACTTAAGGATGAGACGTCTTCGTGGATATGAAATAAAGGCAATTGAAGCAGCCATTGAATGGAATCTAAGTACGGTTGAAGCTGGAGCTCAAGGAGAACACAAAGTCCAACGTGGTTACATGCCTGTGACAACGTATAGCTGTCATTACATTCCTGATAAAAGTT

Ace file of the UniGene sp_v3.0_unigene79451

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF482 domain containing protein	-	-	1.0e-20	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%

Source	Gene names
Sma3	At2g23390; CHLREDRAFT_130370; GSVIVT00035338001; Os04g0442200; OsI_16027; OsJ_14922; P0076O17.10; PHYPADRAFT_140454; POPTRDRAFT_297271; RCOM_0497340;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G23390.1	" CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33	6.0e-23	79%
RefSeq	Arabidopsis thaliana	NP_179920.1	uncharacterized protein [Arabidopsis thaliana]	8.0e-23	79%
RefSeq	Populus trichocarpa	XP_002328800.1	predicted protein, partial [Populus trichocarpa]	6.0e-24	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQC8

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 94 - 473

Fln protein: GMQYHWKNRDYKSFDDFLMDLKQSKRKTIRQERKKILASNLRMRRLRGYEIKAIEAAIEWNLSTVEAGAQGEHKVQRGYMPVTTYSCHYIPDKS

Protein Length: 95

Fln nts: TTGGAATGCAGTACCATTGGAAAAATCGTGACTATAAGAGCTTTGATGATTTTTTAATGGACTTGAAGCAGAGCAAAAGAAAAACTATTCGGCAAGAGCGCAAAAAGATTCTAGCCTCAAACTTAAGGATGAGACGTCTTCGTGGATATGAAATAAAGGCAATTGAAGCAGCCATTGAATGGAATCTAAGTACGGTTGAAGCTGGAGCTCAAGGAGAACACAAAGTCCAACGTGGTTACATGCCTGTGACAACGTATAGCTGTCATTACATTCCTGATAAAAGTT

Fln Alignment:

GD4IA4404H5O7F___GMQYHWKNRDYKSFDDFLMDLKQSKRKTIRQERKKILASNLRMRRLRGYEIKA
B8LQC8_______________GMQYHWKNRDYKSFDDFLMDLKQSKRKTIRQERKKILAQNLRMRRLRGYEIKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain