SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79442

Length: 300 nt

UniGene Fasta

>sp_v3.0_unigene79442
CCTGAATTGGTTCTTCTGAAGGATGAGGGAGAGCAAATTCAGGTAGTGGATTTTGGAGAAAGTGGTCCTGTTCGATGCTCTCGTTGCAAAGGATACATAAATCCTTTTATGAGATTCATTGATCAGGGTAGACGTTTTGTCTGTAATTTGTGTGGATTCAGCAATGAGACACCCCGAGAATATCATTGTAATTTGGGTCCAGATGGAAGGCGTCGTGATGCGGATGAAAGGCCAGAGCTCTGCAGAGGCACAGTTGAATTTGTTGCCACAAAAGAGTACATGGTCAGGGATCCAATGCCT

Ace file of the UniGene sp_v3.0_unigene79442

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein transport protein Sec24C, putative n=1 Tax=Ricinus communis RepID=B9RJ34_RICCO	-	-	0.0	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%
Sma3	Protein transport protein Sec24C, putative	-	-	3.155e-08	-

Source	Gene names
Sma3	At3g07100; At3g44340; At4g32640; CEF; CHLREDRAFT_195442; CHLREDRAFT_195443; F4D11.160; GSVIVT00027410001; LOC_Os11g29200; LOC_Os12g24250; MICPUCDRAFT_28751; MICPUCDRAFT_49909; MICPUN_77748; MICPUN_92170; OSIGBa0131J24.5; OSJNBa0027H09.17; OSTLU_44386; OST

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	COPII vesicle coat	GO:0030127	Cellular Component	-
Sma3	endoplasmic reticulum-Golgi intermediate compartment membrane	GO:0033116	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	intracellular protein transport	GO:0006886	Biological Process	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	von Willebrand factor, type A	IPR002035	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32640.1	Sec23/Sec24 protein transport family protein chr4:15742661-15750424 FORWARD LENGTH=1080	82%
RefSeq	Arabidopsis thaliana	NP_194990.5	sec24-like transport protein [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002319053.1	predicted protein, partial [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR65

Fln msg: Distance to subject end: 597 aas, your sequence is shorter than subject: 100 - 1055

Fln protein: PELVLLKDEGEQIQVVDFGESGPVRCSRCKGYINPFMRFIDQGRRFVCNLCGFSNETPREYHCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMP

Protein Length: 101

Fln nts: CCTGAATTGGTTCTTCTGAAGGATGAGGGAGAGCAAATTCAGGTAGTGGATTTTGGAGAAAGTGGTCCTGTTCGATGCTCTCGTTGCAAAGGATACATAAATCCTTTTATGAGATTCATTGATCAGGGTAGACGTTTTGTCTGTAATTTGTGTGGATTCAGCAATGAGACACCCCGAGAATATCATTGTAATTTGGGTCCAGATGGAAGGCGTCGTGATGCGGATGAAAGGCCAGAGCTCTGCAGAGGCACAGTTGAATTTGTTGCCACAAAAGAGTACATGGTCAGGGATCCAATGCCT

Fln Alignment:

GD4IA4404IE9XT___GEQIQVVDFGESGPVRCSRCKGYINPFMRFIDQGRRFVCNLCGFSNETPREYHCNLGPDGRRRDADERPELCRGTVEFVATKEYMVRDPMP
C0PR65_______________GEEIPVVDFGNSGIVRCRRCRTYVNPYVTFTDGGRRWRCNVCSLLNDVAGEYFAPLDVNGRRRDADERPELSKGSVEFVAPTEYMVRPPMP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain