SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79437

Length: 224 nt

UniGene Fasta

>sp_v3.0_unigene79437
GTAAGTCGATGCATGCAGCGTGTCATTGAATTCATCTCCTCCCTGTGCCAACAATTGGTGGGATCAGCCCGAATTTCAAAGTCTAAATGAACAGCAACTCAGTAAACTTTATTGGGTACGCAAAAACTACCTGATTTACGACTACTGTCACGACAGATCCGGCAGGTTTCCTGTGACTCCAGCAGAATGTGCATTGAATCCTAGTTGATACTTAATCAGGACAG

Ace file of the UniGene sp_v3.0_unigene79437

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative xyloglucan endotransglucosylase/hydrolase [Selaginella kraussiana]	-	-	3.0e-11	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	-
Sma3	cellular glucan metabolic process	GO:0006073	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13870.1	EXGT-A4, XTH5 xyloglucan endotransglucosylase/hydrolase 5 chr5:4475089-4476217 REVERSE LENGTH=293	1.0e-15	51%
RefSeq	Arabidopsis thaliana	NP_196891.1	xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana]	2.0e-15	51%
RefSeq	Populus trichocarpa	XP_002320401.1	predicted protein [Populus trichocarpa]	6.0e-14	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQP4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 69 - 293

Fln protein: *VDACSVSLNSSPPCANNWWDQPEFQSLNEQQLSKLYWVRKNYLIYDYCHDRSGRFPVTPAECALNPS*

Protein Length: 70

Fln nts: GTAAGTCGATGCATGCAGCGTGTCATTGAATTCATCTCCTCCCTGTGCCAACAATTGGTGGGATCAGCCCGAATTTCAAAGTCTAAATGAACAGCAACTCAGTAAACTTTATTGGGTACGCAAAAACTACCTGATTTACGACTACTGTCACGACAGATCCGGCAGGTTTCCTGTGACTCCAGCAGAATGTGCATTGAATCCTAGTTGA___TACTTAATCAGGACAG

Fln Alignment:

GD4IA4404I2Y8A___VDACSVSLNSSPPCANNWWDQPEFQSLNEQQLSKLYWVRKNYLIYDYCHDRSGRFPVTPAECALNP
A9NQP4_______________IDACSVSSNSSLPCANNWWDQSEFQSLNQHQLRRLQWVRKNHMTYDYCHDRSGRFSVTPAECAFNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain