SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79392

Length: 278 nt

UniGene Fasta

>sp_v3.0_unigene79392
GGAAAATGTGTGAACTTGTTAGAGCTAGACCTTTCATACAATAGGCTTAGTGGGAAGATACCTCCAACCGTTGCAAGCCTTGCAAATTTAGCTATCTATTTCAACCTCTCAAACAATTTATTAGTGGGTCACTTGCCTTTGGAACTCAGTAAGATGACTATGATTCAAGCTATAGATATTTCTGCAAATCAGCTAACTGGTTATATTCCAAGTGGGCTTAGAAGTTGCAAAGAATTACAATATTTAAATCTTTCTTGCAATGCACTTCAAGAGCTAAT

Ace file of the UniGene sp_v3.0_unigene79392

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os06g0186300 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0DE01_ORYSJ	-	-	3.0e-21	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%

Source	Gene names
Sma3	At2g24130; GSVIVT00017170001; Os06g0186300; OsI_21950; OsJ_20379; OsJ_20381; P0568D10.11; P0568D10.8; POPTRDRAFT_578711; POPTRDRAFT_762951; RCOM_1406740; VITISV_011849;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G24130.1	Leucine-rich receptor-like protein kinase family protein chr2:10258148-10261220 FORWARD LENGTH=980	2.0e-23	56%
RefSeq	Arabidopsis thaliana	NP_179990.1	putative leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]	2.0e-23	56%
RefSeq	Populus trichocarpa	XP_002324522.1	predicted protein [Populus trichocarpa]	3.0e-25	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: STOP codon was not found. Distance to subject end: 8 aas, your sequence is shorter than subject: 92 - 551

Fln protein: GKCVNLLELDLSYNRLSGKIPPTVASLANLAIYFNLSNNLLVGHLPLELSKMTMIQAIDISANQLTGYIPSGLRSCKELQYLNLSCNALQEL

Protein Length: 93

Fln nts: GGAAAATGTGTGAACTTGTTAGAGCTAGACCTTTCATACAATAGGCTTAGTGGGAAGATACCTCCAACCGTTGCAAGCCTTGCAAATTTAGCTATCTATTTCAACCTCTCAAACAATTTATTAGTGGGTCACTTGCCTTTGGAACTCAGTAAGATGACTATGATTCAAGCTATAGATATTTCTGCAAATCAGCTAACTGGTTATATTCCAAGTGGGCTTAGAAGTTGCAAAGAATTACAATATTTAAATCTTTCTTGCAATGCACTTCAAGAGCTAAT

Fln Alignment:

GD4IA4404JUR67___GKCVNLLELDLSYNRLSGKIPPTVASLANLAIYFNLSNNLLVGHLPLELSKMTMIQAIDISANQLTGYIPSGLRSCKELQYLNLSCNA
B8LRW5_______________GDCLRLEVLDLSHNRFHGNIPRTVAGLRNLQFYFNLSSNLLEVSLPLEISKMTMVQEINVAVNRLTGSIPSGLESCTEVQYLNLSWNS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain