SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79311

Length: 355 nt

UniGene Fasta

>sp_v3.0_unigene79311
CAAATGAGATTGGAGCAGAGAGAGTGGGAATACGGCTCTCACCATTTGCACAATATCTAGAATCCAGTGACTCAGATCCTGAGGCTCTTGGGCTTTACATGGCTGAAACCTTAAATAGATACAATATCCTGTATGCCCACTATGTAGAGCCCAGACTGGTAACTTCATTTGAATCTGTTGCAACAGACAAGAGTCTGTTTCCAATGAGGAAGGCATTCAAGGGATCATTCTGGTTGCAGGCGGTTATGGTAGAGAAGATGGAAATGAAGCAATTGCAAGTGGTAAGGCTGATCTTGTAGTTGGTTACACAGACTATCCATTCCTGGAGTGAACTATCGATGCATTATATCTACGT

Ace file of the UniGene sp_v3.0_unigene79311

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	12-oxophytodienoic acid 10, 11-reductase [Pisum sativum] dbj\|BAD12185.1\| 12-oxophytodienoic acid 10,11-reductase [Pisum sativum]	-	-	3.0e-29	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Chromosome chr18 scaffold_24, whole genome shotgun sequence	-	-	8.248e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	12-oxophytodienoate reductase.	EC:1.3.1.42	-	1.965e-16	-

Source	KEGGs	Term	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592	1.965e-16	%
Sma3	Biosynthesis of plant hormones	01070	1.965e-16	%
Sma3	Metabolic pathways	01100	1.965e-16	%

Source	Gene names
Sma3	At1g09400; At1g76680; At1g76690; CROYEH; F14J9.6; F28O16.5; F28O16.6; GSVIVT00002893001; GSVIVT00021891001; GSVIVT00021908001; GSVIVT00021909001; GSVIVT00021911001; GSVIVT00021916001; GSVIVT00021918001; GSVIVT00021920001; GSVIVT00021922001; LEDI-5b; OPDAR

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	12-oxophytodienoate reductase activity	GO:0016629	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	jasmonic acid biosynthetic process	GO:0009695	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NADH:flavin oxidoreductase/NADH oxidase, N-terminal	IPR001155	-	0.0	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G76690.1	OPR2, ATOPR2 12-oxophytodienoate reductase 2 chr1:28778976-28780355 FORWARD LENGTH=374	1.0e-29	64%
RefSeq	Arabidopsis thaliana	NP_177795.1	12-oxophytodienoate reductase 2 [Arabidopsis thaliana]	2.0e-29	64%
RefSeq	Populus trichocarpa	XP_002327289.1	predicted protein [Populus trichocarpa]	1.0e-27	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P127

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 27 aas, your sequence is shorter than subject: 99 - 376

Fln protein: NEIGAERVGIRLSPFAQYLESSDSDPEALGLYMAETLNRYNILYAHYVEPRLVTSFESVATDKSLFPMRKAFKGSFWLQAVMVEKMEMKQLQVVRLIL*

Protein Length: 100

Fln nts: CAAATGAGATTGGAGCAGAGAGAGTGGGAATACGGCTCTCACCATTTGCACAATATCTAGAATCCAGTGACTCAGATCCTGAGGCTCTTGGGCTTTACATGGCTGAAACCTTAAATAGATACAATATCCTGTATGCCCACTATGTAGAGCCCAGACTGGTAACTTCATTTGAATCTGTTGCAACAGACAAGAGTCTGTTTCCAATGAGGAAGGCATTCAAGGGATCATTCTGGTTGCAGGCGGTTATGGTAGAGAAGATGGAAATGAAGCAATTGCAAGTGGTAAGGCTGATCTTGTAGTTGGTTACACAGACTATCCATTCCTGGAGTGAACTATCGATGCATTATATCTACGT

Fln Alignment:

GD4IA4404IPTB4___NEIGAERVGIRLSPFAQYLESSDSDPEALGLYMAETLNRYNILYAHYVEPRLVTSFESVATDKSLFPMRKAFKGSF
A9P127_______________NEIGGERVGIRLSPFAQYLESSDSDPEALGLYMAEALNRYNILYAHYVEPRLVTTFEPVATNKSLFPMRKAFKGSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain