SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79310

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene79310
GGAAAGGTGAACATTGATCCTCTTCTTCCTCAAGTAGAAAACCGCTCCCATGTCTACTGCGTCACAGGAGGAGGAGGATACATTGGATCCTGGCTAGTAAAGACTTTGCTAGAGAATGGCCACACAGTACATGCTACTCTCAGAGATCCAGAGAACCCATCAAAGAATACATGCCTTCTCTCACTCCCGGGAGCCCAAGAGAGGCTTCGTCTC

Ace file of the UniGene sp_v3.0_unigene79310

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	anthocyanidin reductase [Ginkgo biloba]	-	-	4.0e-12	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Cinnamoyl CoA reductase	-	-	7.33e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrokaempferol 4-reductase.	EC:1.1.1.219	-	3.009e-15	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Flavonoid biosynthesis	00941		3.009e-15	%
Sma3	Biosynthesis of phenylpropanoids	01061		3.009e-15	%
Sma3	Metabolic pathways	01100		3.009e-15	%
Sma3	Biosynthesis of secondary metabolites	01110		3.009e-15	%
Sma3	Cinnamoyl-CoA reductase.	EC:1.2.1.44	-	6.116e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylpropanoid biosynthesis	00940	6.116e-11	%
Sma3	Biosynthesis of phenylpropanoids	01061	6.116e-11	%
Sma3	Metabolic pathways	01100	6.116e-11	%
Sma3	Biosynthesis of secondary metabolites	01110	6.116e-11	%

Source	Gene names
Sma3	AN6; AT1G15950; ApDFR; At1g15950; At1g80820; CAD1-1; CAD1-7; CCR; CCR1; CCR2; CCRL1; CCRL3; DFR; DFR2; DFRA; Dfr1; F23A5.17; GSVIVT00000921001; GSVIVT00001375001; GSVIVT00002404001; GSVIVT00002448001; GSVIVT00008924001; GSVIVT00008925001; GSVIVT0000892900

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	cinnamoyl-CoA reductase activity	GO:0016621	Molecular Function	-
Sma3	dihydrokaempferol 4-reductase activity	GO:0045552	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	3-beta hydroxysteroid dehydrogenase/isomerase	IPR002225	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein chr5:6556493-6558123 FORWARD LENGTH=326	2.0e-15	61%
RefSeq	Arabidopsis thaliana	NP_197445.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	2.0e-15	61%
RefSeq	Populus trichocarpa	XP_002314050.1	cinnamoyl CoA reductase-like protein [Populus trichocarpa]	1.0e-16	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P2C7

Fln msg: Distance to subject end: 277 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 71 - 350

Fln protein: GKVNIDPLLPQVENRSHVYCVTGGGGYIGSWLVKTLLENGHTVHATLRDPENPSKNTCLLSLPGAQERLRL

Protein Length: 72

Fln nts: GGAAAGGTGAACATTGATCCTCTTCTTCCTCAAGTAGAAAACCGCTCCCATGTCTACTGCGTCACAGGAGGAGGAGGATACATTGGATCCTGGCTAGTAAAGACTTTGCTAGAGAATGGCCACACAGTACATGCTACTCTCAGAGATCCAGAGAACCCATCAAAGAATACATGCCTTCTCTCACTCCCGGGAGCCCAAGAGAGGCTTCGTCTC

Fln Alignment:

GD4IA4404JTC2N___KVNIDPLLPQVENRSHVYCVTGGGGYIGSWLVKTLLENGHTVHATLRDPENPSKNTCLLSLPGAQERLRL
A9P2C7_______________KMNIDPLFTQQENRRQVYCVTGGGGYIGSWLVKTLLENGYTVHATLRDPGNTSKNSFLLSLPGAQERLRL

SSRs (tot: 1)

Start position	End position	Sequence	Length
66	78	AGG AGG AGG AGG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain