SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79259

Length: 187 nt

UniGene Fasta

>sp_v3.0_unigene79259
TCCAACCGTGATTCCATTTCTCCTGAGGACTTGAGAAGCATTAAACTGAAGAGATCAACTATTGAAAACGCTGCCAAACATTTAGGTGGGGGGAAGAAAGGAATGCTGCATCTCCTGAAACTGATACTGGCATGGGTGCAGAATCATCATTTGCAGCGTAAAAGGAGCTGTTTTCTTCTCAACAGAT

Ace file of the UniGene sp_v3.0_unigene79259

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor viviparous 1 n=1 Tax=Picea abies RepID=Q9FVK1_PICAB	-	-	3.0e-11	63%
FL-Next	tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	94%
Sma3	ABI3-like factor	-	-	1.34e-11	-

Source	Gene names
Sma3	ABI3; GSVIVT00001240001; McVp1; Os01g0911700; OsI_04880; OsJ_04504; POPTRDRAFT_408900; PvALF; RCOM_1721890; VITISV_009009; VP 1; VP1; VP1/ABI3; Vp-1B; Vp-1Bb; Vp-1Bc; abi3; vip; vp1; vp1-McW; vp1A; vp1B; vp1D; wbABI3;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	basal transcription repressor activity	GO:0017163	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FVK1

Fln msg: Distance to subject end: 502 aas, your sequence is shorter than subject: 62 - 828

Fln protein: SNRDSISPEDLRSIKLKRSTIENAAKHLGGGKKGMLHLLKLILAWVQNHHLQRKRSCFLLNR

Protein Length: 63

Fln nts: TCCAACCGTGATTCCATTTCTCCTGAGGACTTGAGAAGCATTAAACTGAAGAGATCAACTATTGAAAACGCTGCCAAACATTTAGGTGGGGGGAAGAAAGGAATGCTGCATCTCCTGAAACTGATACTGGCATGGGTGCAGAATCATCATTTGCAGCGTAAAAGGAGCTGTTTTCTTCTCAACAGAT

Fln Alignment:

GD4IA4404I8LPY___SNRDSISPEDLRSIKLKRSTIENAAXXXXXXXXXXXXXXXXXXAWVQNHHLQRKRSCF
Q9FVK1_______________SNRDSISPEDLRSIKLKRSTIENAAKHLGGGKKGMLHLLKLILAWVQNHHLQRKRKLY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain