SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79254

Length: 105 nt

UniGene Fasta

>sp_v3.0_unigene79254
CCCGGGGTACTACGATGGAAGATACTGGGTGATGTGGAAGTTGCCGATGTTTGGGTGCACAGAGGCATCTCAGGATAAACGAGGTGAACGAGTGTGCCAAGGAAT

Ace file of the UniGene sp_v3.0_unigene79254

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribulose bisphosphate carboxylase small chain (Fragment) n=1 Tax=Pinus pinaster RepID=Q8RVI7_PINPS	-	-	4.0e-09	100%
FL-Next	sp=Ribulose bisphosphate carboxylase small chain, chloroplastic; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	0.0	81%
Sma3	Ribulose bisphosphate carboxylase small chain	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribulose-bisphosphate carboxylase.	EC:4.1.1.39	-	1.409e-18	-

Source	KEGGs	Term	e value	Identity
Sma3	Glyoxylate and dicarboxylate metabolism	00630	1.409e-18	%
Sma3	Carbon fixation in photosynthetic organisms	00710	1.409e-18	%
Sma3	Metabolic pathways	01100	1.409e-18	%

Source	Gene names
Sma3	LOC_Os12g19394; LOC_Os12g19470; Os12g0291100; Os12g0291400; Os12g0292400; OsI_018348; OsI_38042; OsI_38046; OsJ_17688; OsJ_35811; OsJ_35814; OsJ_35820; POPTRDRAFT_580797; POPTRDRAFT_813777; RBC5; RBCS; RBCS-1; RBCS-2; RBCS-2A; RBCS-2B; RBCS-2C; RBCS-3; RB

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast ribulose bisphosphate carboxylase complex	GO:0009573	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	ribulose-bisphosphate carboxylase activity	GO:0016984	Molecular Function	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	carbon fixation	GO:0015977	Biological Process	-
Sma3	reductive pentose-phosphate cycle	GO:0019253	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribulose bisphosphate carboxylase small chain, domain	IPR000894	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G67090.1	RBCS1A ribulose bisphosphate carboxylase small chain 1A chr1:25048465-25049249 REVERSE LENGTH=180	1.0e-11	60%
RefSeq	Arabidopsis thaliana	NP_001031981.1	ribulose bisphosphate carboxylase small chain 3B [Arabidopsis thaliana]	1.0e-11	60%
RefSeq	Populus trichocarpa	XP_002329284.1	predicted protein [Populus trichocarpa]	4.0e-13	95%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: P10053

Fln msg: Distance to subject end: 28 aas, your sequence is shorter than subject: 34 - 171

Fln protein: PGYYDGRYWVMWKLPMFGCTEASQDKRGERVCQG

Protein Length: 35

Fln nts: CCCGGGGTACTACGATGGAAGATACTGGGTGATGTGGAAGTTGCCGATGTTTGGGTGCACAGAGGCATCTCAGGATAAACGAGGTGAACGAGTGTGCCAAGGAAT

Fln Alignment:

GD4IA4404IR4ZJ___PGYYDGRYWVMWKLPMFGCTEASQDKRGERVC
P10053_______________PGYYDGRYWVMWKLPMFGCTEASQVINEVREC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain