SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79244

Length: 308 nt

UniGene Fasta

>sp_v3.0_unigene79244
ATTTATTGTAGGCTTTGATTATCAGGAAGTATAAATATGGCGGATAATGGAAGTTTTAGTTCGGCCTACGAGAACTCTGCTGGGAACGGTTTAGCAAAAATCCAGACGCAGAAGAAGCATAATGGGATCTGTCACGATGATAGTACTACTCCTGTGAAGGCGCATACTCTGGACGAGCTCCATTCGTTGCAGAAGAAGAAATCTGCGCCTTCAACTCCCATTAAAGGAGCTCAGGGGGCGTTTGCTGCTCAACTGTCCGAGGACGAAAGACAGAAGCAGCAGCTGAAGTCCATCAGTGCTTCTCTGGC

Ace file of the UniGene sp_v3.0_unigene79244

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoenolpyruvate carboxykinase n=3 Tax=Flaveria RepID=Q94LX8_FLATR	-	-	2.0e-25	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Phosphoenolpyruvate carboxykinase	-	-	8.924e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoenolpyruvate carboxykinase (ATP).	EC:4.1.1.49	-	3.535e-20	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	3.535e-20	%
Sma3	Citrate cycle (TCA cycle)	00020	3.535e-20	%
Sma3	Pyruvate metabolism	00620	3.535e-20	%
Sma3	Carbon fixation in photosynthetic organisms	00710	3.535e-20	%
Sma3	Metabolic pathways	01100	3.535e-20	%
Sma3	Biosynthesis of secondary metabolites	01110	3.535e-20	%

Source	Gene names
Sma3	At4g37870; GSVIVT00000856001; GSVIVT00013331001; LOC_Os03g15050; Os03g0255500; OsI_10803; OsJ_10175; PCK; PCKA; POPTRDRAFT_719763; POPTRDRAFT_816402; Pepck; RCOM_0188120; RCOM_1584090; T28I19.150; VITISV_037541; pck3-11; pck3-19; pck4-9;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	Phosphoenolpyruvate carboxykinase, N-terminal	IPR008210	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Phosphoenolpyruvate carboxykinase (ATP), conserved site	IPR015994	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G37870.1	PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 chr4:17802974-17806332 REVERSE LENGTH=671	8.0e-19	50%
RefSeq	Arabidopsis thaliana	NP_195500.1	phosphoenolpyruvate carboxykinase [ATP] [Arabidopsis thaliana]	1.0e-18	50%
RefSeq	Populus trichocarpa	XP_002302349.1	predicted protein [Populus trichocarpa]	8.0e-31	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE68

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 90 - 263

Fln protein: MADNGSFSSAYENSAGNGLAKIQTQKKHNGICHDDSTTPVKAHTLDELHSLQKKKSAPSTPIKGAQGAFAAQLSEDERQKQQLKSISASL

Protein Length: 91

Fln nts: ATTTATTGTAGGCTTTGATTATCAGGAAGTATAAAT_-_ATGGCGGATAATGGAAGTTTTAGTTCGGCCTACGAGAACTCTGCTGGGAACGGTTTAGCAAAAATCCAGACGCAGAAGAAGCATAATGGGATCTGTCACGATGATAGTACTACTCCTGTGAAGGCGCATACTCTGGACGAGCTCCATTCGTTGCAGAAGAAGAAATCTGCGCCTTCAACTCCCATTAAAGGAGCTCAGGGGGCGTTTGCTGCTCAACTGTCCGAGGACGAAAGACAGAAGCAGCAGCTGAAGTCCATCAGTGCTTCTCTGGC

Fln Alignment:

GD4IA4404JZJWY___MADNGSFSSAYENSAGNGLAKIQTQKKHNGICHDDSTTPVKAHTLDELHSLQKKKSAPSTPIKGAQGAFAAQLSEDERQKQQLKSISASL
D5AE68_______________MADNGDFTFANERSAGNGLARIQTQKKQNGICHDDSAPPVKAQTLDELHSLQKKKSAPSTPNKGAQLGFAAQLSEEERQKQQMQSISASL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain