SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79197

Length: 441 nt

UniGene Fasta

>sp_v3.0_unigene79197
GAATGAGAAGCTTAGCAGTAAGCCAGTCCTTGTAATTGCTCCAAAAAGTACTCTTCCTGGGTGGGATCAGGAATTTCGGAAATGGGGATCAGATCTGAACGTGATTATTTATCAGGGTGATAAGGACTCACGTTCCTGTATTCGTGAGCACGAGTTTTACACATCTACAAAGAGAGTTCTCTTTGATGTCTTGGTTACTAGTTTTGAACTAGCAATGATTGACAACTTTGTTCTACAAAAATTCAAGTGGTCAAGCATCATTGTTGATGAGGGTCATCGCATCAAAAATTTTCGTTCCAAATTGGGCACTATTCTGAAGCAGCAGGCAACAGATTTCCGCTTACTCTTAACTGGAACTCCACTTCAAAATCATGAGCAGAGTTATTTGCATTGCTTCATTTCCTGGATCCATCTGAAATTCCAGATCCAGAATCTGCAGCT

Ace file of the UniGene sp_v3.0_unigene79197

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2 family DNA-dependent ATPase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TJL1_PHYPA	-	-	0.0	73%
FL-Next	sp=CHD3-type chromatin-remodeling factor PICKLE; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	47%
Sma3	SNF2 family DNA-dependent ATPase	-	-	2.652e-06	-

Source	Gene names
Sma3	At2g25170; CHR1521; CHR1535; CHR911; F13D4.130; GSVIVT00022239001; GSVIVT00032703001; GYM; MICPUN_58978; MICPUN_60550; Os01g0881000; OsI_04668; OsJ_04298; P0018C10.57; PHYPADRAFT_172248; PHYPADRAFT_93608; PKL; POPTRDRAFT_415868; VITISV_043259;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Rubredoxin-type fold	IPR004039	-	-
Sma3	Domain of unknown function DUF1086	IPR009462	-	-
Sma3	Domain of unknown function DUF1087	IPR009463	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25170.1	PKL, GYM, CHD3, CHR6, SSL2 chromatin remodeling factor CHD3 (PICKLE) chr2:10714411-10723763 FORWARD LENGTH=1384	2.0e-32	47%
RefSeq	Arabidopsis thaliana	NP_565587.1	CHD3-type chromatin-remodeling factor PICKLE [Arabidopsis thaliana]	3.0e-32	47%
RefSeq	Populus trichocarpa	XP_002309665.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	2.0e-30	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9S775

Fln msg: Distance to subject end: 904 aas, your sequence is shorter than subject: 146 - 1384

Fln protein: NEKLSSKPVLVIAPKSTLPGWDQEFRKWGSDLNVIIYQGDKDSRSCIREHEFYTSTKRVLFDVLVTSFELAMIDNFVLQKFKWSSIIVDEGHRIKNFRSKLGTILKQQATDFRLLLTGTPLQNHEQSYLHCFISWIHLKFQIQNLQ

Protein Length: 147

Fln nts: GAATGAGAAGCTTAGCAGTAAGCCAGTCCTTGTAATTGCTCCAAAAAGTACTCTTCCTGGGTGGGATCAGGAATTTCGGAAATGGGGATCAGATCTGAACGTGATTATTTATCAGGGTGATAAGGACTCACGTTCCTGTATTCGTGAGCACGAGTTTTACACATCTACAAAGAGAGTTCTCTTTGATGTCTTGGTTACTAGTTTTGAACTAGCAATGATTGACAACTTTGTTCTACAAAAATTCAAGTGGTCAAGCATCATTGTTGATGAGGGTCATCGCATCAAAAATTTTCGTTCCAAATTGGGCACTATTCTGAAGCAGCAGGCAACAGATTTCCGCTTACTCTTAACTGGAACTCCACTTCAAAATCATGAGCAGAGTTATTTGCATTGCTTCATTTCCTGGATCCATCTGAAATTCCAGATCCAGAATCTGCAGCT

Fln Alignment:

GD4IA4404I47YJ___PVLVIAPKSTLPGWDQEFRKWGSDLNVIIYQGDKDSRSCIREHEFYTST-------------------KRVLFDVLVTSFELAMIDNFVLQKFKWSSIIVDEGHRIKNFRSKLGTILKQQATDFRLLLTGTPLQNH
Q9S775_______________PHLVIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain