SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79173

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene79173
ATAATGAACGTGTTCAGGAACTTAATACTGTAACTCAAGAACGTGATGATCTCAAGAGGCAACACGATGAGCTGCGGAAGAAAAGGCTGGATGAGTTCATGGCGGGCTTCAATACTATTTCACTGAAGTTGAAAGAAATGTATCAGATGATCACTCTGGGGGGTGATGCTGAATTGGAGCTTGTTGACTCGTTGGATCCCTTTGCCGAAGGTGTCGTTTTCAGTGTCCGCC

Ace file of the UniGene sp_v3.0_unigene79173

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Structural maintenance of chromosomes protein 4 n=2 Tax=Arabidopsis thaliana RepID=SMC4_ARATH	-	-	7.0e-31	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Sma3	Structural maintenance of chromosomes protein 4	-	-	2.745e-09	-

Source	Gene names
Sma3	At5g48600; CAP-C; CHLREDRAFT_122088; CPC1501; CPC901; GSVIVT00011148001; GSVIVT00020955001; K15N18.7; MICPUCDRAFT_33825; MICPUN_56721; OJ1118_C04.7; OSTLU_242; OsI_20464; OsI_20467; OsJ_19059; Ot06g01430; PHATR_44165; PHYPADRAFT_111974; POPTRDRAFT_577636;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	chromosome organization	GO:0051276	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	RecF/RecN/SMC	IPR003395	-	-
Sma3	SMCs flexible hinge	IPR010935	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48600.2	SMC3 structural maintenance of chromosome 3 chr5:19701908-19709091 FORWARD LENGTH=1244	5.0e-38	88%
RefSeq	Arabidopsis thaliana	NP_199671.1	structural maintenance of chromosomes protein 4 [Arabidopsis thaliana]	6.0e-38	88%
RefSeq	Populus trichocarpa	XP_002323859.1	condensin complex components subunit [Populus trichocarpa]	5.0e-37	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9A1

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 76 - 295

Fln protein: NERVQELNTVTQERDDLKRQHDELRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFAEGVVFSVR

Protein Length: 77

Fln nts: ATAATGAACGTGTTCAGGAACTTAATACTGTAACTCAAGAACGTGATGATCTCAAGAGGCAACACGATGAGCTGCGGAAGAAAAGGCTGGATGAGTTCATGGCGGGCTTCAATACTATTTCACTGAAGTTGAAAGAAATGTATCAGATGATCACTCTGGGGGGTGATGCTGAATTGGAGCTTGTTGACTCGTTGGATCCCTTTGCCGAAGGTGTCGTTTTCAGTGTCCGCC

Fln Alignment:

GD4IA4404IGKEC___NERVQELNTVTQERDDLKRQHDELRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFAEGVVFSVR
D5A9A1_______________NERVQELNTVTQERDDLKKQRDELRKKRLDEFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFAEGVVFSVR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain