SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79101

Length: 135 nt

UniGene Fasta

>sp_v3.0_unigene79101
TAGGAGAATGGGTTGCAAAACGTGTTTTTGACTTAGACCCAAAAAATGCTGGTCGTTACGTACTCCTCTCAAACATCTATGCTGCTGCTGGTAGATGGAATGATGTGGTAAAGGTGAGAGCGTTGATGAGGGAAA

Ace file of the UniGene sp_v3.0_unigene79101

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Source	Gene names
Sma3	OJ1001_D02.30; OsI_08374; OsJ_07836; PHYPADRAFT_169414;

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	WD40 repeat, conserved site	IPR019775	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39350.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr5:15750929-15752962 FORWARD LENGTH=677	4.0e-12	59%
RefSeq	Arabidopsis thaliana	NP_198751.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	5.0e-12	59%
RefSeq	Populus trichocarpa	XP_002330082.1	predicted protein [Populus trichocarpa]	9.0e-13	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADG9

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 44 - 312

Fln protein: GEWVAKRVFDLDPKNAGRYVLLSNIYAAAGRWNDVVKVRALMRE

Protein Length: 45

Fln nts: TAGGAGAATGGGTTGCAAAACGTGTTTTTGACTTAGACCCAAAAAATGCTGGTCGTTACGTACTCCTCTCAAACATCTATGCTGCTGCTGGTAGATGGAATGATGTGGTAAAGGTGAGAGCGTTGATGAGGGAAA

Fln Alignment:

GD4IA4404IQX0X___GEWVAKRVFDLDPKNAGRYVLLSNIYAAAGRWNDVVKVRALMRE
D5ADG9_______________GERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVAKVRKMMKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain