SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79053

Length: 204 nt

UniGene Fasta

>sp_v3.0_unigene79053
GACCGACCATAAGAATGCGCATCTCCTTCTTTGCAAAAAGCCGCTGGAAAAGCTTGTTACTACTATCCCAACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATCAGCTTCACTGTTTGGGATGTTGGAGGTCAGGACAAGATCCGACCACTTTGGAGACATCTCTAGCCTCAACTACACGGTCTCTATCATTGCTG

Ace file of the UniGene sp_v3.0_unigene79053

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP ribosylation factor 1, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LJ98_9ALVE	-	-	7.0e-18	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	ADP-ribosylation factor	-	-	3.843e-20	-

Source	Gene names
Sma3	24.t00012; ARF; ARF1; ARF2-A; ARF2-B; ARF3; ARFA1-A; ARFA1-D; ARFA1A; ARFA1B; ARFA2-A; ARFA2-B; ARL1; Arf; Arf1; ArfA11; ArfA12; ArfA13; ArfA14; ArfA15; ArfB1A1; ArfB1B1; At1g10630; At1g23490; At1g70490; At2g15310; At3g62290; At5g14670; CGL49; CHLREDRAFT_

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	endosome	GO:0005768	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	signal transducer activity	GO:0004871	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62290.1	ATARFA1E, ARFA1E ADP-ribosylation factor A1E chr3:23052287-23053545 FORWARD LENGTH=181	6.0e-24	76%
RefSeq	Arabidopsis thaliana	NP_001190162.1	ADP-ribosylation factor A1E [Arabidopsis thaliana]	8.0e-24	76%
RefSeq	Populus trichocarpa	XP_002312302.1	predicted protein [Populus trichocarpa]	7.0e-24	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 89 aas, your sequence is shorter than subject: 58 - 181

Fln protein: TDHKNAHLLLCKKPLEKLVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHL*

Protein Length: 59

Fln nts: GACCGACCATAAGAATGCGCATCTCCTTCTTTGCAAAAAGCCGCTGGAAAAGCTTGTTACTACTATCCCAACCATTGGTTTCAATGTGGAGACTGTAGAATACAAGAATATCAGCTTCACTGTTTGGGATGTTGGAGGTCAGGACAAGATCCGACCACTTTGGAGACATCTCTAGCCTCAACTACACGGTCTCTATCATTGCTG

Fln Alignment:

GD4IA4404I52O6___LLCKKPLEKLVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHL*PQLHGL
C0PPL2_______________ILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain