SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79026

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene79026
TCCTCATGATTCCCTATCTACTCCTATTTCAAGCGCCACGCACCATATACTCATGTGACAGCGTCCTAGTTTACGCGAGCTTCTGTGATGGTGCAGTTGGAGTGTTTGATGCAGAAAGCTTGATGCCAAACTGTCGCAGTGCACCTTCTGCATATTTACCATCGGGAATGAACCGGTTATTTATGCAGAGCAGTAATCCCTATCCCCTAGTCGTCGCTTTAGATCCATCCGAATCGAATCAA

Ace file of the UniGene sp_v3.0_unigene79026

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Topless-related protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%

Source	Gene names
Sma3	GSVIVT00014065001; GSVIVT00022669001; Os08g0162100; OsI_27917; OsJ_26138; P0577B11.132; PHYPADRAFT_150439; PHYPADRAFT_234967; POPTRDRAFT_596940; RCOM_1324430; RCOM_1434170; VITISV_013612;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G27030.2	TPR3 TOPLESS-related 3 chr5:9508913-9515263 REVERSE LENGTH=1134	2.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_198055.3	Topless-related protein 3 [Arabidopsis thaliana]	3.0e-13	50%
RefSeq	Populus trichocarpa	XP_002328986.1	predicted protein [Populus trichocarpa]	3.0e-17	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84JM4

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 80 - 1108

Fln protein: LMIPYLLLFQAPRTIYSCDSVLVYASFCDGAVGVFDAESLMPNCRSAPSAYLPSGMNRLFMQSSNPYPLVVALDPSESNQ

Protein Length: 81

Fln nts: TCCTCATGATTCCCTATCTACTCCTATTTCAAGCGCCACGCACCATATACTCATGTGACAGCGTCCTAGTTTACGCGAGCTTCTGTGATGGTGCAGTTGGAGTGTTTGATGCAGAAAGCTTGATGCCAAACTGTCGCAGTGCACCTTCTGCATATTTACCATCGGGAATGAACCGGTTATTTATGCAGAGCAGTAATCCCTATCCCCTAGTCGTCGCTTTAGATCCATCCGAATCGAATCAA

Fln Alignment:

GD4IA4404IM6BH___IYSCDSVLVYASFCDGAVGVFDAESLMPNCRSAPSAYLPSGMNRLFMQSSNPYPLVVALDPSESNQ
Q84JM4_______________VYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQGNQGL-------SPLVVAAHPQDPNQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain