SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene79006

Length: 360 nt

UniGene Fasta

>sp_v3.0_unigene79006
GGGGGTATAATCCAGCCCCAACAAGGCCAATCTTCAGCTGGGTTCTCCCTCCATCAAAACGAGAATACCCCATCCGAGGACTGAATCTCATCCGCCTCCTTACCCAGAACCGTATTGCCGATTTCCATACGACGTTGGAATCCCTTCCACTCTCAGCAGATGAGATCGCGGAGAGTCCATATATCAGCCATCCGGTCAATCTCGAGCGCTGGCTAATGGAGGGTAGCTACAGCAAGGTCTGGAATGCTAGGGGAGGAGGCCCCAACCGAGGAGTATAAGATCTTCGTTGATAGCCTCGTCGGAACGATACGTAACGAGATTGCAGGTTGCGAGGAAACGGCATATAATAGCCTACCGCTG

Ace file of the UniGene sp_v3.0_unigene79006

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome 26S subunit n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8NY78_COPC7	-	-	3.99931e-42	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	GSVIVT00006696001; Os07g0435100; OsI_25803; OsJ_24032; OsRPN12; P0673E01.24; PHYPADRAFT_183729; RCOM_1312190;

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	proteasome regulatory particle	GO:0005838	Cellular Component	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAC3/GANP/Nin1/mts3/eIF-3 p25	IPR005062	-	0.0	-
Sma3	26S proteasome non-ATPase regulatory subunit Rpn12	IPR006746	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G42040.1	RPN12b regulatory particle non-ATPase 12B chr5:16813835-16814749 REVERSE LENGTH=233	4.0e-15	50%
RefSeq	Arabidopsis thaliana	NP_199019.2	26S proteasome non-ATPase regulatory subunit RPN12B [Arabidopsis thaliana]	5.0e-15	50%
RefSeq	Populus trichocarpa	XP_002303668.1	predicted protein [Populus trichocarpa]	9.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPE5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 67 aas, your sequence is shorter than subject: 92 - 267

Fln protein: GYNPAPTRPIFSWVLPPSKREYPIRGLNLIRLLTQNRIADFHTTLESLPLSADEIAESPYISHPVNLERWLMEGSYSKVWNARGGGPNRGV*

Protein Length: 93

Fln nts: GGGGGTATAATCCAGCCCCAACAAGGCCAATCTTCAGCTGGGTTCTCCCTCCATCAAAACGAGAATACCCCATCCGAGGACTGAATCTCATCCGCCTCCTTACCCAGAACCGTATTGCCGATTTCCATACGACGTTGGAATCCCTTCCACTCTCAGCAGATGAGATCGCGGAGAGTCCATATATCAGCCATCCGGTCAATCTCGAGCGCTGGCTAATGGAGGGTAGCTACAGCAAGGTCTGGAATGCTAGGGGAGGAGGCCCCAACCGAGGAGTATAAGATCTTCGTTGATAGCCTCGTCGGAACGATACGTAACGAGATTGCAGGTTGCGAGGAAACGGCATATAATAGCCTACCGCTG

Fln Alignment:

GD4IA4404I3AHX___VLPPSKREYPIRGLNLIRLLTQNRIADFHTTLESLPLSADEIAESPYISHPVNLERWLMEGSYSKVWNARGGGPN
B8LPE5_______________LIPPSAQEYPILGLNLLRLLVQNRIAEFHTELE---LLSPEALENPCIKHAVELEQSFMEGAYNRVLSARQAVPH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain