SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78993

Length: 123 nt

UniGene Fasta

>sp_v3.0_unigene78993
ATTATAAGCCTAGTGCTGCAAGTCGTGATGGAGATGGAAGTCTTCGAATGGATTTGATTTCCCGCACAGCAGAATCTATTGCAGGATGGGTAGATATAATTAATCGTACAAATTCGCAGATAT

Ace file of the UniGene sp_v3.0_unigene78993

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	5.0e-06	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	GOs	Term	Type	Identity
Sma3	DNA replication factor C complex	GO:0005663	Cellular Component	-
Sma3	DNA clamp loader activity	GO:0003689	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA replication	GO:0006260	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	DNA replication factor RFC1, C-terminal	IPR013725	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXU4

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 40 - 550

Fln protein: YKPSAASRDGDGSLRMDLISRTAESIAGWVDIINRTNSQI

Protein Length: 41

Fln nts: ATTATAAGCCTAGTGCTGCAAGTCGTGATGGAGATGGAAGTCTTCGAATGGATTTGATTTCCCGCACAGCAGAATCTATTGCAGGATGGGTAGATATAATTAATCGTACAAATTCGCAGATAT

Fln Alignment:

GD4IA4404JNRLM___YKPSAASRDGDGSLRMDLISRTAESIAGWVDIIN
A9NXU4_______________YKPSAASRDGDGSLRMDLIARAAESIADG-DIIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain