SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78989

Length: 176 nt

UniGene Fasta

>sp_v3.0_unigene78989
ATTGCGAAGCGGATAGTGCTTTCCGGACACCCCTTCAAACTGCATCGCAAGACAGCAACCGTGCGATACATGTTCTTCAATCCAGAGGACATCAGCTACTTCAAGCCCGTCCAGTTGCACACAAAATACGGAAGGACAGGCCACATAAAGGAGAGTCTCGGAACGCACGGGTACTT

Ace file of the UniGene sp_v3.0_unigene78989

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosome biogenesis protein tsr1 n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=A8N772_COPC7	-	-	6.0e-25	84%
FL-Next	tr=Singapore isolate B (sub-type 7) whole genome shotgun sequence assembly, scaffold_0; Blastocystis hominis.	-	-	0.0	62%
Sma3	cDNA clone:J013157I04, full insert sequence	-	-	8.285e-06	-

Source	Gene names
Sma3	CHLREDRAFT_174486; LOC_Os11g19250; MICPUCDRAFT_13817; Os11g0298400; OsI_35872;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleus	GO:0005634	Cellular Component	0.0	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosome biogenesis protein BMS1/TSR1, C-terminal	IPR007034	-	0.0	-
Sma3	AARP2CN	IPR012948	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G42440.1	" FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown functi	3.0e-16	52%
RefSeq	Arabidopsis thaliana	NP_564480.1	uncharacterized protein [Arabidopsis thaliana]	3.0e-16	52%
RefSeq	Populus trichocarpa	XP_002307783.1	predicted protein [Populus trichocarpa]	2.0e-16	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8LUR1

Fln msg: Distance to subject end: 36 aas, your sequence is shorter than subject: 58 - 241

Fln protein: IAKRIVLSGHPFKLHRKTATVRYMFFNPEDISYFKPVQLHTKYGRTGHIKESLGTHGY

Protein Length: 59

Fln nts: ATTGCGAAGCGGATAGTGCTTTCCGGACACCCCTTCAAACTGCATCGCAAGACAGCAACCGTGCGATACATGTTCTTCAATCCAGAGGACATCAGCTACTTCAAGCCCGTCCAGTTGCACACAAAATACGGAAGGACAGGCCACATAAAGGAGAGTCTCGGAACGCACGGGTACTT

Fln Alignment:

GD4IA4404JFB29___IAKRIVLSGHPFKLHRKTATVRYMFFNPEDISYFKPVQLHTKYGRTGHIKESLGTHGY
D8LUR1_______________VLKKVVLTGTPFKVKRKLATVRHMFLDPKDIFWFKPIELHTKLGLVGHIREPLGTHGY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain