SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78907

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene78907
ACACTGGTTGCCTGATGATGCTCAATGCGAGTGGCTGTGTTATTCCATGTCAAAACTGTGTAATAGGTACAGGGACATTTGGATGTAGTACTGTTATTGTTGAAGGAGAGGATTTTATTGCTGAGGGAATCACCTTTGAAAATGCTGCTCCAGAGGGTTCAGGTCAAGCTGTAGCTATTCGAGTAACAGCTGACAGGTGTGCTTTTTTATAGTTGCAGA

Ace file of the UniGene sp_v3.0_unigene78907

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pectinesterase n=2 Tax=Malpighiales RepID=B9H3W4_POPTR	-	-	2.0e-18	91%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Sma3	Pectinesterase	-	-	3.709e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Pectinesterase.	EC:3.1.1.11	-	2.21e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	2.21e-11	%
Sma3	Starch and sucrose metabolism	00500	2.21e-11	%
Sma3	Metabolic pathways	01100	2.21e-11	%

Source	Gene names
Sma3	ARATH31; At3g29090; GSVIVT00021009001; LOC_Os10g26680; MXE2.5; MtrDRAFT_AC155888g12v2; OSJNBa0060A14.17; Os10g0407000; OsI_33526; OsJ_31472; PHYPADRAFT_189145; PME31; POPTRDRAFT_818003; RCOM_0537800;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	pectinesterase activity	GO:0030599	Molecular Function	-
Sma3	aspartyl esterase activity	GO:0045330	Molecular Function	-
Sma3	cell wall modification	GO:0042545	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G29090.1	PME31, ATPME31 pectin methylesterase 31 chr3:11073804-11075335 FORWARD LENGTH=317	1.0e-24	91%
RefSeq	Arabidopsis thaliana	NP_566842.1	pectinesterase 31 [Arabidopsis thaliana]	2.0e-24	91%
RefSeq	Populus trichocarpa	XP_002305315.1	predicted protein [Populus trichocarpa]	1.0e-24	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB84

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 188 aas, your sequence is shorter than subject: 70 - 302

Fln protein: TGCLMMLNASGCVIPCQNCVIGTGTFGCSTVIVEGEDFIAEGITFENAAPEGSGQAVAIRVTADRCAFL*

Protein Length: 71

Fln nts: ACACTGGTTGCCTGATGATGCTCAATGCGAGTGGCTGTGTTATTCCATGTCAAAACTGTGTAATAGGTACAGGGACATTTGGATGTAGTACTGTTATTGTTGAAGGAGAGGATTTTATTGCTGAGGGAATCACCTTTGAAAATGCTGCTCCAGAGGGTTCAGGTCAAGCTGTAGCTATTCGAGTAACAGCTGACAGGTGTGCTTTTTTATAGTTGCAGA

Fln Alignment:

GD4IA4404JU8LU___TFGCSTVIVEGEDFIAEGITFENAAPEGSGQAVAIRVTADRCAF
D5AB84_______________TYGSATVAVNADGFVARDITFENAAGPGSQQAVALRVDSDLSAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain