SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78903

Length: 495 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78903
CGTCAAGTCTTGACATACCCTTCGACATACTACCGCTTATTGCCCATCCTCTCCAGGGCTTTCGTATTCATCGAGCTCGGGAGGTACACGACAACAGCATTGGATGAGATGCAACAACGGCTTGCGAATCGAGATACCTCCCTTCTTGCCGAGATGCACGCTCTCTTGTGCGGCTTAAAAGTCTTGGTTTCTACTCACGGAGTTAGTGATATCGAAACTGCTCGACGTTCTATGGGCGGTCATGGGTACAGTGCATTTGCTGGGCTGGGGCGCTTATATGTTGATTATCTTCCCGCCGTAACGGTTGAAGGAGACAATTTTGTCCTGGACGGACAGGTGGTACGTGCAGCCGGAAAACTATGCAATGCAGTGCTCTCCGCAGCCACCGCTGTCACCGATCTTCCCCTTCCATCAGCTTACCTGCGTTTGTTGTCTGCCAATAACTCCCGTCCACTAGTCACCGCAACAACTTGGTACGATGTCTCAGCTGTTGTG

Ace file of the UniGene sp_v3.0_unigene78903 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl-CoA oxidase n=1 Tax=Coprinopsis cinerea okayama7#130 RepID=D6RQ74_COPC7	-	-	9.94922e-44	63%
FL-Next	sp=Acyl-coenzyme A oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUR5

Fln msg: Distance to subject end: 178 aas, your sequence is shorter than subject: 165 - 660

Fln protein: RQVLTYPSTYYRLLPILSRAFVFIELGRYTTTALDEMQQRLANRDTSLLAEMHALLCGLKVLVSTHGVSDIETARRSMGGHGYSAFAGLGRLYVDYLPAVTVEGDNFVLDGQVVRAAGKLCNAVLSAATAVTDLPLPSAYLRLLSANNSRPLVTATTWYDVSAVV

Protein Length: 166

Fln nts: CGTCAAGTCTTGACATACCCTTCGACATACTACCGCTTATTGCCCATCCTCTCCAGGGCTTTCGTATTCATCGAGCTCGGGAGGTACACGACAACAGCATTGGATGAGATGCAACAACGGCTTGCGAATCGAGATACCTCCCTTCTTGCCGAGATGCACGCTCTCTTGTGCGGCTTAAAAGTCTTGGTTTCTACTCACGGAGTTAGTGATATCGAAACTGCTCGACGTTCTATGGGCGGTCATGGGTACAGTGCATTTGCTGGGCTGGGGCGCTTATATGTTGATTATCTTCCCGCCGTAACGGTTGAAGGAGACAATTTTGTCCTGGACGGACAGGTGGTACGTGCAGCCGGAAAACTATGCAATGCAGTGCTCTCCGCAGCCACCGCTGTCACCGATCTTCCCCTTCCATCAGCTTACCTGCGTTTGTTGTCTGCCAATAACTCCCGTCCACTAGTCACCGCAACAACTTGGTACGATGTCTCAGCTGTTGTG

Fln Alignment:

GD4IA4404JN7FP___QVLTYPSTYYRLLPILSRAFVFIELGRYTTTALDEMQQRLANRDTSLLAEMHALLCGLKVLVSTHGVSDIETARRSMGGHGYSAFAGLGRLYVDYLPAVTVEGDNFVLDGQV
A9NUR5_______________QVLDYPTQQQKIFPLLASAYAFRFVGQWMESLYSEVMYQFENNNFSALAEIHACTSGLKALTTSVTADAIEKCRKACGGHGYLCASGLPELFAAYIPSCTYEGDNTLLFIQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain