SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78851

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene78851
CAAGAAAGAAACTCTGATCCATGTAAAATGCCGAGAACACATTTCAATATACACCATTCAAAGCGTGCCCCTCTTTTTCCAGCATTTTGATGGGCCATTCTTCCCTACCCTTCGATTACTCCATCAATATCCATTCCTTTTACCCAAAGTTGGGGTTGACAGAGGCGCAATTCGCTTCCTCTTGGCGGGGCTCCAATGATGTGCCCAGGACTAACTTCAGCTGGAGGTTATCTG

Ace file of the UniGene sp_v3.0_unigene78851

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MLL [Hordeum vulgare subsp. vulgare] gb\|ACK99544.1\| MCT-1 [Hordeum vulgare subsp. vulgare] gb\|ACK99545.1\| MCT-1 [Hordeum vulgare] emb\|CBI83389.1\| MCT-1 like PUA RNA binding-domain containing protein [Hordeum vulgare subsp. vulgare] emb\|CBI83391.1\| MCT-1 l	-	-	3.0e-17	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00022683001; PHYPADRAFT_194340; POPTRDRAFT_662670; POPTRDRAFT_744559; RCOM_1433890; VITISV_022458;

Source	GOs	Term	Type	e value	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L18e	IPR000039	-	-
Sma3	Pseudouridine synthase/archaeosine transglycosylase	IPR002478	-	-
Sma3	Uncharacterised domain CHP00451	IPR004521	-	-
Sma3	Translation-associated RNA-binding, predicted	IPR016437	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein chr1:2946599-2948908 FORWARD LENGTH=181	1.0e-18	55%
RefSeq	Arabidopsis thaliana	NP_172387.1	pseudouridine synthase and archaeosine transglycosylase domain-containing protein [Arabidopsis thaliana]	2.0e-18	55%
RefSeq	Populus trichocarpa	XP_002330175.1	predicted protein [Populus trichocarpa]	6.0e-21	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NLI5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 59 aas, your sequence is shorter than subject: 66 - 181

Fln protein: KKETLIHVKCREHISIYTIQSVPLFFQHFDGPFFPTLRLLHQYPFLLPKVGVDRGAIRFLLAGLQ*

Protein Length: 67

Fln nts: CAAGAAAGAAACTCTGATCCATGTAAAATGCCGAGAACACATTTCAATATACACCATTCAAAGCGTGCCCCTCTTTTTCCAGCATTTTGATGGGCCATTCTTCCCTACCCTTCGATTACTCCATCAATATCCATTCCTTTTACCCAAAGTTGGGGTTGACAGAGGCGCAATTCGCTTCCTCTTGGCGGGGCTCCAATGATGTGCCCAGGACTAACTTCAGCTGGAGGTTATCTG

Fln Alignment:

GD4IA4404INP51___KKETLIHVKCREHISIYTIQSVPLFFQHFDGPFFPTLRLLHQYPFLLPKVGVDRGAIRFLLAG
A9NLI5_______________KKSPLIVAKCQNHINLILVNNVPLFFNVRDGPYMPTLRLLHQYPNIMKKMQVDRGAIKFVLAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain