SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78835

Length: 260 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78835
AAGTGCCCTACTATGCTATGCCCTTGATATGATTCTTGACAATGATGCTTTGATGGGGAGTATAGATAGTGAAGAGCAGAATGAAATGGTAGAGTCTGCAGCAGAATTATTGTATGGGCTAATTCATCTTCGCTATATCTTGACAGTAAAGGGCTGAATGCTATGCTTGAAAAATACAAGAGAGTTGATTTTGGAAGATGCCCAAGAGTTTGTTGTGGAGGGCAACCGTGCCTGCCTGCAAGTCAGTCAGACATTCCTCG

Ace file of the UniGene sp_v3.0_unigene78835 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Casein kinase II beta chain, putative n=1 Tax=Ricinus communis RepID=B9SKF5_RICCO	-	-	6.0e-25	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Casein kinase II beta chain, putative	-	-	3.345e-16	-

Source	Gene names
Sma3	26.t00110; 40.t00069; At2g44680; At3g60250; At4g17640; At4g17640/dl4855w; At5g47080; CKB1; CKB2; CKB3; F16B22.17; F27H5_40; GSVIVT00006443001; GSVIVT00015872001; GSVIVT00019032001; Hvck2b; K14A3.3; LOC_Os10g41520; OJ1058_B11.121; OSJNBa0027P10.8; Os07g049

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	protein kinase CK2 complex	GO:0005956	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	protein kinase CK2 regulator activity	GO:0008605	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	positive regulation of circadian rhythm	GO:0042753	Biological Process	-
Sma3	photoperiodism, flowering	GO:0048573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Casein kinase II, regulatory subunit	IPR000704	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Casein kinase II, regulatory subunit, alpha-helical	IPR016149	-	-
Sma3	Casein kinase II, regulatory subunit, beta-sheet	IPR016150	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G47080.1	CKB1 casein kinase II beta chain 1 chr5:19124969-19126397 REVERSE LENGTH=287	2.0e-26	75%
RefSeq	Arabidopsis thaliana	NP_199519.1	casein kinase 2 subunit beta [Arabidopsis thaliana]	2.0e-26	75%
RefSeq	Populus trichocarpa	XP_002326487.1	predicted protein, partial [Populus trichocarpa]	4.0e-28	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2P6

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 70 aas, your sequence is shorter than subject: 86 - 284

Fln protein: SALLCYALDMILDNDALMGSIDSEEQNEMVESAAELLYGLIHLRYILTVKG*MLCLKNTRELILEDAQEFVVEGNRACLQVSQTFL

Protein Length: 87

Fln nts: AAGTGCCCTACTATGCTATGCCCTTGATATGATTCTTGACAATGATGCTTTGATGGGGAGTATAGATAGTGAAGAGCAGAATGAAATGGTAGAGTCTGCAGCAGAATTATTGTATGGGCTAATTCATCTTCGCTATATCTTGACAGTAAAGGGCTGAATGCTATGCTTGAAAAATACAAGAGAGTTGATTTTGGAAGATGCCCAAGAGTTTGTTGTGGAGGGCAACCGTGCCTGCCTGCAAGTCAGTCAGACATTCCTCG

Fln Alignment:

GD4IA4403G4P65___YALDMILDNDALMGSIDSEEQNEMVESAAELLYGLIHLRYILTVKG*MLCLKNTRELILEDAQEFVVEGNRACLQVSQT
A9P2P6_______________YALDMILDNDALSGDIDSEEQNEMVESAAELLYGLIHLRYILTSKGLNAMLEKYKRVDFGRCPR-VCCGGQPCLPASQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain