SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78833

Length: 230 nt

UniGene Fasta

>sp_v3.0_unigene78833
CTGCTCCAGACCGGCGGGAACCTGGACGGTGGGCGGAAGTTGAGGAGAATCGCACCGTGTCCGGCTGCCGGAGCCTGCGACTGGGTCGAGGATCCCAACACGGCGTTAGCCGAACCGCGGTGGTATGCGACCGATCAGCTCCTGCCAGACGGCAGAGTAATCGTCGTGGGAGGCAGAGCGGTTTTCACTTACGAATTCGTGCCGAAAGCGAGAGGAGAAGGAAGCTTCTC

Ace file of the UniGene sp_v3.0_unigene78833

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glyoxal oxidase [Vitis pseudoreticulata]	-	-	3.0e-16	54%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	64%

Source	Gene names
Sma3	At1g75620; GSVIVT00015939001; GSVIVT00028985001; LOC_Os03g15320; OSJNBa0001A14.8; Os03g0258900; Os05g0559000; OsI_10817; OsI_20949; OsJ_10202; OsJ_19517; PHYPADRAFT_107573; PHYPADRAFT_110746; PHYPADRAFT_110805; PHYPADRAFT_119103; PHYPADRAFT_121452; PHYPAD

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75620.1	glyoxal oxidase-related protein chr1:28394951-28396594 REVERSE LENGTH=547	1.0e-20	59%
RefSeq	Arabidopsis thaliana	NP_177692.1	glyoxal oxidase-related protein [Arabidopsis thaliana]	1.0e-20	59%
RefSeq	Populus trichocarpa	XP_002322929.1	predicted protein [Populus trichocarpa]	2.0e-22	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RLP0

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 76 - 550

Fln protein: LLQTGGNLDGGRKLRRIAPCPAAGACDWVEDPNTALAEPRWYATDQLLPDGRVIVVGGRAVFTYEFVPKARGEGSF

Protein Length: 77

Fln nts: CTGCTCCAGACCGGCGGGAACCTGGACGGTGGGCGGAAGTTGAGGAGAATCGCACCGTGTCCGGCTGCCGGAGCCTGCGACTGGGTCGAGGATCCCAACACGGCGTTAGCCGAACCGCGGTGGTATGCGACCGATCAGCTCCTGCCAGACGGCAGAGTAATCGTCGTGGGAGGCAGAGCGGTTTTCACTTACGAATTCGTGCCGAAAGCGAGAGGAGAAGGAAGCTTCTC

Fln Alignment:

GD4IA4403HF714___LLQTGGNLDGGRKLRRIAPCPAAGACDWVEDPNTALAEPRWYATDQLLPDGRVIVVGGRAVFTYEFVPKARGE
D8RLP0_______________LLHTGGDFDGNRKLRYFVPCPEPGACDWVESSDQSLKAGRWYATNQLLPDGRTIVVGGRDSFTLEFVPPSPGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain