SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78825

Length: 190 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene78825
CTGAGCTGAAACTCCGTTCCAAGGGCCTGTGGGATGTGCCACATCCATGGTTAAATTTATTGGTTCCAGGATCCAAAATTCAGGAATTCGATGCAAGAGTGTTTAAAGACATTCTTCGCAACACAAGCAGTGGTCCCATACTTATTTACCCCATGAACAGTAACACATGGGACAAACGAATGTCAGCAGT

Ace file of the UniGene sp_v3.0_unigene78825 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gulonolactone oxidase, putative n=1 Tax=Ricinus communis RepID=B9R807_RICCO	-	-	4.0e-20	74%
FL-Next	sp=Cytokinin dehydrogenase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Sma3	Cytokinin oxidase	-	-	2.763e-36	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cytokinin dehydrogenase.	EC:1.5.99.12	-	6.172e-28	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Zeatin biosynthesis	00908		6.172e-28	%

Source	Gene names
Sma3	At1g75450; At2g19500; At2g41510; At3g63440; At4g29740; At5g56970; B1046G12.8; B1131G07.3; B1131G07.5; B1150F11.25; BoCKX1; BrCKX1; CKX; CKX1; CKX2; CKX3; CKX4; CKX5; CKX6; CKX7; F1B16.2; F3P11.10; GSVIVT00013006001; GSVIVT00014541001; GSVIVT00016550001; G

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	primary amine oxidase activity	GO:0008131	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	cytokinin dehydrogenase activity	GO:0019139	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	cytokinin metabolic process	GO:0009690	Biological Process	-
Sma3	cytokinin catabolic process	GO:0009823	Biological Process	-
Sma3	inflorescence development	GO:0010229	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxygen oxidoreductase covalent FAD-binding site	IPR006093	-	-
Sma3	FAD linked oxidase, N-terminal	IPR006094	-	-
Sma3	Cytokinin dehydrogenase 1, FAD/cytokinin binding domain	IPR015345	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	FAD-binding, type 2, subdomain 1	IPR016167	-	-
Sma3	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G75450.1	CKX5, ATCKX5, ATCKX6 cytokinin oxidase 5 chr1:28315248-28318064 REVERSE LENGTH=540	5.0e-25	70%
RefSeq	Arabidopsis thaliana	NP_001185402.1	cytokinin dehydrogenase 5 [Arabidopsis thaliana]	6.0e-25	70%
RefSeq	Populus trichocarpa	XP_002332424.1	cytokinin oxidase [Populus trichocarpa]	4.0e-24	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q67YU0

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 62 - 540

Fln protein: ELKLRSKGLWDVPHPWLNLLVPGSKIQEFDARVFKDILRNTSSGPILIYPMNSNTWDKRMSA

Protein Length: 63

Fln nts: CTGAGCTGAAACTCCGTTCCAAGGGCCTGTGGGATGTGCCACATCCATGGTTAAATTTATTGGTTCCAGGATCCAAAATTCAGGAATTCGATGCAAGAGTGTTTAAAGACATTCTTCGCAACACAAGCAGTGGTCCCATACTTATTTACCCCATGAACAGTAACACATGGGACAAACGAATGTCAGCAGT

Fln Alignment:

GD4IA4403GDUAJ___ELKLRSKGLWDVPHPWLNLLVPGSKIQEFDARVFKDILRNTSSGPILIYPMNSNTWDKRMSA
Q67YU0_______________ELKLRSKNLWEVPHPWLNLFVPKSRISDFDKGVFKGILGNKTSGPILIYPMNKDKWDERSSA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain