SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78822

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene78822
TCGTTTAGTCTAACTATTCCGTAAGTCTTCTAAGCTTCACGCGCTGACGAATCTCGATAGACTTGTGGACAATTTTTGGCCCGAGATATCAACCAGCGTCTCTCTAATAGAAAGCTTATATGAGGATGAAACTTTTGGTCAACAACAGCTTGCTGGACTGGTGGCATCAAAGGTTTTTTNTACCTTGGTGAGCACAACGACTCTTGTCGTATGCGCTAG

Ace file of the UniGene sp_v3.0_unigene78822

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome regulatory subunit N2 [Arabidopsis thaliana] gb\|AAC04490.1\| 26S proteasome regulatory subunit (RPN2), putative [Arabidopsis thaliana] gb\|AAM20712.1\| 26S proteasome regulatory subunit [Arabidopsis thaliana] gb\|AEC08730.1\| 26S proteasome regu	-	-	7.0e-11	71%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	76%

Source	Gene names
Sma3	At1g04810; At2g32730; B0402A04.3; F13M7.20; GSVIVT00031868001; OSJNBa0060N03.12; Os08g0224700; OsI_17319; OsI_28284; OsJ_16095; OsJ_26464; P0494D11.3; PHYPADRAFT_166351; PHYPADRAFT_223480; POPTRDRAFT_577415; POPTRDRAFT_829819; RCOM_1019960; RPN2a; RPN2b;

Source	GOs	Term	Type	Identity
Sma3	proteasome complex	GO:0000502	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	enzyme regulator activity	GO:0030234	Molecular Function	-
Sma3	regulation of protein catabolic process	GO:0042176	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Proteasome/cyclosome, regulatory subunit	IPR002015	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit	IPR016642	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G32730.1	26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit chr2:13880189-13885464 FORWARD LENGTH=1004	1.0e-14	71%
RefSeq	Arabidopsis thaliana	NP_180832.1	26S proteasome regulatory subunit N2 [Arabidopsis thaliana]	2.0e-14	71%
RefSeq	Populus trichocarpa	XP_002300175.1	predicted protein [Populus trichocarpa]	7.0e-13	67%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: A9SSP2

Fln msg: Distance to subject end: 866 aas, atg_distance in limit (1-15): atg_distance = 12, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 950

Fln protein: LFRKSSKLHALTNLDRLVDNFWPEISTSVSLIESLYEDETFGQQQLAGLVASKVFYTLVSTTTLVVCA

Protein Length: 69

Fln nts: TCGTTTAGTCTAACTATTCCGTAAGTCTTCTAAGCTTCACGCGCTGACGAATCTCGATAGACTTGTGGACAATTTTTGGCCCGAGATATCAACCAGCGTCTCTCTAATAGAAAGCTTATATGAGGATGAAACTTTTGGTCAACAACAGCTTGCTGGACTGGTGGCATCAAAGGTTTTTTaTACCTTGGTGAGCACAACGACTCTTGTCGTATGCGCTAG

Fln Alignment:

GD4IA4403GINA4___KLHALTNLDRLVDNFWPEISTSVSLIESLYEDETFGQQQLAGLVASKVFYTL
A9SSP2_______________KLHALKNLNVLVDNFWPEISTNISAIESLYEDDTFYERQLAALVASKVFYYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain