SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene78788

Length: 215 nt

UniGene Fasta

>sp_v3.0_unigene78788
GTTTATTAGAAAGGCCCAGGGAGCCCATTTATGGTATATGCGTCAGACACATTCGGCCCTAAACGATACCTTATTTGCTACCAAGTTTAGCCAGAAGCTAAGAAGCTTGGCCACACCACAGTTTCCAGCAGCTGTTCCTCAGAGCGTTGATAAGCACTTCTTCTTCACGGTTGGCTTGGGATTGAATCCATGTCCCAAGGGGCAAAAATGCCAAG

Ace file of the UniGene sp_v3.0_unigene78788

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Laccase n=1 Tax=Pinus taeda RepID=Q9AUI4_PINTA	-	-	2.0e-23	91%
FL-Next	tr=Laccase; Pinus taeda (Loblolly pine).	-	-	0.0	91%
Sma3	Laccase	-	-	2.145e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Laccase.	EC:1.10.3.2	-	1.191e-15	-
Sma3	L-ascorbate oxidase.	EC:1.10.3.3	-	9.212e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053		9.212e-12	%
Sma3	Metabolic pathways	01100		9.212e-12	%

Source	Gene names
Sma3	GSVIVT00018427001; GSVIVT00018428001; GSVIVT00018452001; GSVIVT00018453001; GSVIVT00018454001; GSVIVT00021338001; GSVIVT00021342001; GSVIVT00021343001; GSVIVT00021344001; GSVIVT00021345001; GSVIVT00023200001; GSVIVT00024402001; GSVIVT00024434001; LAC10; L

Source	GOs	Term	Type	Identity
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	laccase activity	GO:0008471	Molecular Function	-
Sma3	lignin catabolic process	GO:0046274	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-
Sma3	Laccase	IPR017761	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60020.1	LAC17, ATLAC17 laccase 17 chr5:24168072-24170223 FORWARD LENGTH=577	3.0e-16	52%
RefSeq	Arabidopsis thaliana	NP_200810.1	laccase 17 [Arabidopsis thaliana]	4.0e-16	52%
RefSeq	Populus trichocarpa	XP_002329137.1	predicted protein [Populus trichocarpa]	4.0e-20	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9AUI4

Fln msg: Distance to subject end: 189 aas, your sequence is shorter than subject: 71 - 574

Fln protein: FIRKAQGAHLWYMRQTHSALNDTLFATKFSQKLRSLATPQFPAAVPQSVDKHFFFTVGLGLNPCPKGQKCQ

Protein Length: 72

Fln nts: GTTTATTAGAAAGGCCCAGGGAGCCCATTTATGGTATATGCGTCAGACACATTCGGCCCTAAACGATACCTTATTTGCTACCAAGTTTAGCCAGAAGCTAAGAAGCTTGGCCACACCACAGTTTCCAGCAGCTGTTCCTCAGAGCGTTGATAAGCACTTCTTCTTCACGGTTGGCTTGGGATTGAATCCATGTCCCAAGGGGCAAAAATGCCAAG

Fln Alignment:

GD4IA4403F9CS3___RQTHSALNDTLFATKFSQKLRSLATPQFPAAVPQSVDKHFFFTVGLGLNPCPKGQKCQ
Q9AUI4_______________KPTLPALNDTSFATKFSQKLRSLATPQFPAAVPQSVDKHFFFTVGLGLNPCPKGQKCQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain